Support Function for GridEngine

qsub-one.sh

    function qsub-one () {
        SHOWHELP="false"
        GRID_OPTION=("-cwd")
        GRID_SHELL="/bin/zsh"
        
        while getopts p:n:m:hs: OPT; do
            case $OPT in
                "h") SHOWHELP="true";;
                "n") GRID_NAME="$OPTARG";;
                "m") GRID_OPTION=("${GRID_OPTION[@]}" "-l" "s_vmem=$OPTARG,mem_req=$OPTARG");;
                "p") GRID_OPTION=("${GRID_OPTION[@]}" "-pe" "def_slot" "$OPTARG");;
                "s") GRID_SHELL="$OPTARG";;
            esac
        done
        shift $((OPTIND -1 ))

        if [ -z "$GRID_NAME" ];then
            GRID_NAME=$1
        fi


        GRID_OPTION=("${GRID_OPTION[@]}" "-S" "$GRID_SHELL" "-N" "$GRID_NAME")

        if [[ -z $1 ]]; then
            SHOWHELP=true
        fi

        if [[ "$SHOWHELP" = "true" ]];then
            echo "$0 [options] command ..."
            echo
            echo " -h         : show this help"
            echo " -n NAME    : job name"
            echo " -m MEMORY  : Memory size with unit"
            echo " -p THREADS : # of threds"
            echo " "
            return 1
        fi
        
        echo -e "export PATH=\"$PATH\"\nexport LD_LIBRARY_PATH=\"$LD_LIBRARY_PATH\"\n"'"$@"'|qsub $GRID_OPTION -- "$@"
    }