Biomart: manually send a query

query_biomart

Write the file q1.txt:
query=
<!DOCTYPE Query>
<Query client="true" processor="TSV" limit="100" header="1">
     <Dataset name="hsapiens_snp" config="snp_1_config">
          <Filter name="chr_name" value="22"/>
          <Filter name="chrom_start" value="1"/>
          <Filter name="chrom_end" value="80000000"/>
    
          <Attribute name="refsnp_id"/>
          <Attribute name="refsnp_source_description"/>
          <Attribute name="chrom_start"/>
          <Attribute name="allele"/>
          <Attribute name="refsnp_source"/>
          <Attribute name="chr_name"/>
          <Attribute name="synonym_name"/>
     </Dataset>
</Query>



From terminal:
curl -d @q1.txt http://localhost:9000/martservice/results > results.txt