Master configuration file for eyemotion experiments

master.yaml

# Global configuration
---
data_paths:
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/EPRIME_TEXTS_JANFORMAT_August28"
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/Preprocessed/i"
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/Preprocessed/events"
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/Raw Data/EPrime"
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/Raw Data/OA"
    - "/Users/yan/Dropbox/EyeMotion (1)/Data/Raw Data/YA"
pickle_path: "../ex/ex.p"
excluded_subjects:
# Final Exclusions for OAs-->
  - 201 # (ECG too noisy)
  - 204 # (?)
  - 211 # (computer glitch led data to not save)
  - 214 # (ECG too noisy)
  - 215 # (?)
  - 228 # (confusion with instructions)
  - 238 # (confusion with instructions)
  - 249 # (no showed for session II)
# Final Exclusion for YAs-->
  - 143 # (computer glitch led data to not save)
  - 122 # (confusion with instructions)
  - 129 # (no showed for session II)
  - 119 # (computer glitch led data to not save)
  - 113 # (didn't finish Eyemotion due to sneezing)
  - 110 # (incomplete slideshow task- only 9s long)
  - 103 # (no showed for session II)
  - 999 # (pilot)

# File patterns
---
BeGazeCalibration:
    BeGaze:
        samples: '^(?P<Subject>[0-9]{3})(?P<Task_Order>1)_(S|s)amples\.txt$'
        labels:  '^(?P<Subject>[0-9]{3})(?P<Task_Order>1)_(L|l)abels\.txt$'

BiopacCalibration:
    Biopac:
        samples: 'CL_Calibrate_(?P<Subject>[0-9]{3})(?P<Task_Order>1)_[0-9]{4}_ecg_i\.txt$'
        labels:  'events_CL_Calibrate_(?P<Subject>[0-9]{3})(?P<Task_Order>1)_[0-9]{4}\.mat$'

Eyemotion:
    BeGaze:
        samples: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(S|s)amples\.txt$'
        labels: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(L|l)abels\.txt$'
    Biopac:
        samples: '[A-Z]{2}_Eye(M|m)otion_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}_ecg_i\.txt$'
        labels: 'fixed_events_[A-Z]{2}_Eye(M|m)otion_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}\.mat$'
    EPrime:
        samples: 'Eye(M|m)otion_Final2-(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])-[0-9]\.txt$'

Sternberg:
    BeGaze:
        samples: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(S|s)amples\.txt$'
        labels: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(L|l)abels\.txt$'
    Biopac:
        samples: '[A-Z]{2}_Sternberg_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}_ecg_i\.txt$'
        labels: 'events_[A-Z]{2}_Sternberg_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}\.mat$'
    EPrime:
        samples: 'EyeReg_Sternberg_Final-(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])-[0-9]\.txt$'

Slideshow:
    BeGaze:
        samples: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(S|s)amples\.txt$'
        labels: '^(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_(L|l)abels\.txt$'
    Biopac:
        samples: '[A-Z]{2}_Slideshow_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}_ecg_i\.txt$'
        labels: 'events_[A-Z]{2}_Slideshow_(?P<Subject>[0-9]{3})(?P<Task_Order>[2-4])_[0-9]{4}\.mat$'

# Label configurations
---
BeGazeCalibration:
    BeGaze:
        Black:
            duration: 10000
            bins: 1
            pattern: 'Black(?P<Condition>Fix)(?P<ID>[0-9])'
            left_trim: 3000
        White:
            duration: 10000
            bins: 1
            pattern: 'White(?P<Condition>Fix)(?P<ID>[0-9])'
            left_trim: 3000

BiopacCalibration:
    Biopac:
        HeartrateFix:
            duration: 300000
            bins: 1
            pattern:
                Fix: 50

Eyemotion:
    BeGaze:
        InitialFix:
            duration: 8000
            bins: 16
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_InitialFix'
        ShortStim:
            duration: 2000
            bins: 4
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_ShortStim'
        Fix2:
            duration: 3000
            bins: 6
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_Fix2'
        PreCueStim:
            duration: 2000
            bins: 4
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_PreCueStim'
        ImgwCue:
            duration: 1000
            bins: 2
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_ImgwCue'
        LongStim:
            duration: 8000
            bins: 16
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>Attend|Rethink|Distract)_LongStim'
    Biopac:
        InitialFix:
            duration: 8000
            bins: 1
            pattern:
                Rethink: 10
                Distract: 20
                Attend: 30
        ShortStim:
            duration: 2000
            bins: 1
            pattern:
                Rethink: 11
                Distract: 21
                Attend: 31
        Fix2:
            duration: 3000
            bins: 1
            pattern:
                Rethink: 13
                Distract: 23
                Attend: 33
        PreCueStim:
            duration: 2000
            bins: 1
            pattern:
                Rethink: 14
                Distract: 24
                Attend: 34
        ImgwCue:
            duration: 1000
            bins: 1
            pattern:
                Rethink: 15
                Distract: 25
                Attend: 35
        LongStim:
            duration: 8000
            bins: 1
            pattern:
                Rethink: 16
                Distract: 26
                Attend: 36
    EPrime:
        ID: 'Img'
        Condition: 'Condition'
        RateArousal1: 'RateArousal1.RESP'
        RateArousal2: 'RateArousal2.RESP'
        RateEffort: 'RateEffort.RESP'

Sternberg:
    BeGaze:
        ShortStringEncoding:
            duration: 1200
            bins: 1
            pattern: '^(?P<Condition>ShortString_(Absent|Present))_(?P<ID>[A-Z]{1})$'
        ShortStringFix:
            duration: 3000
            bins: 1
            pattern: '^(?P<Condition>ShortString_(Absent|Present))_(?P<ID>[A-Z]{1})Fix2$'
            left_trim: 1250
            right_trim: 1250
        ShortStringResponse:
            duration: 3000
            bins: 6
            pattern: '^(?P<Condition>ShortString_(Absent|Present))_(?P<ID>[A-Z]{1})MemoryResponse2$'
        LongStringEncoding:
            duration: 3600
            bins: 1
            pattern: '^(?P<Condition>LongString_(Absent|Present))_(?P<ID>[A-Z]{6}|TIQUJEA)$'
        LongStringFix:
            duration: 3000
            bins: 1
            pattern: '^(?P<Condition>LongString_(Absent|Present))_(?P<ID>[A-Z]{6}|TIQUJEA)Fix1$'
            left_trim: 1250
            right_trim: 1250
        LongStringResponse:
            duration: 3000
            bins: 6
            pattern: '^(?P<Condition>LongString_(Absent|Present))_(?P<ID>[A-Z]{6}|TIQUJEA)MemoryResponse$'
    Biopac:
        ShortStringEncoding:
            duration: 1200
            bins: 1
            pattern:
                Short: 10
        ShortStringFix:
            duration: 3000
            bins: 1
            pattern:
                Short: 11
            left_trim: 1250
            right_trim: 1250
        ShortStringResponse:
            duration: 3000
            bins: 1
            pattern:
                Short: 12
        LongStringEncoding:
            duration: 3600
            bins: 1
            pattern:
                Long: 20
        LongStringFix:
            duration: 3000
            bins: 1
            pattern:
                Long: 21
            left_trim: 1250
            right_trim: 1250
        LongStringResponse:
            duration: 3000
            bins: 1
            pattern:
                Long: 22
    EPrime:
        ID:
            - 'String'
            - 'ShortString'
        Condition: 'Condition'
        MemoryResponse:
            - 'MemoryReponse1.ACC'
            - 'MemoryReponse2.ACC'

Slideshow:
    BeGaze:
        InitialFix:
            duration: 3000
            bins: 6
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>pos|neutral|neg)_InitialFix'
        LongStim:
            duration: 8000
            bins: 16
            pattern: '(?P<ID>^[0-9\.]+)_(?P<Condition>pos|neutral|neg)_LongStim'
    Biopac:
        InitialFix:
            duration: 3000
            bins: 1
            pattern:
                pos: 10
                neutral: 20
                neg: 30
        LongStim:
            duration: 8000
            bins: 1
            pattern:
                pos: 11
                neutral: 21
                neg: 31