Pass parameters to notebook using URL

README.md

Connect to OMERO, passing parameters as URL query parameters

This notebook requires the parameters host, username, passwd

If you already have a notebook opened you can pass the parameters by adding this query string to the URL in your browser:

?host='HOST'&username='USERNAME'&passwd='PASSWD'

or

?host='HOST'&username='USERNAME'&passwd='PASSWD'&autorun=true

to automatically run the whole notebook.

HOST needs to have support for web-sockets see https://docs.openmicroscopy.org/omero/latest/sysadmins/websockets.html. e.g. wss://workshop.openmicroscopy.org https://mybinder.org/v2/gist/jburel/3068c253073da6df07381fec84f8a9ee/master?urlpath=notebooks%2Fexample.ipynb%3Fhost%3D'HOST'%26username%3D'USERNAME'%26passwd%3D'PASSWORD'%26autorun%3Dtrue

environment.yml

name: base
channels:
  - defaults
  - ome
dependencies:
  - pip
  - omero-py

example.ipynb

postBuild

pip install jupyter-notebookparams==0.0.4
jupyter nbextension install --py jupyter_notebookparams --user
jupyter nbextension enable --py jupyter_notebookparams --user