jbvimort

set PATH=C:\cmake-3.9.1\bin;%PATH%

set ROOT=C:\

cd %ROOT%

cd S-rwdi

set Qt5_DIR=C:\Qt\5.9.1\msvc2015_64\lib\cmake\Qt5

jbvimort

import itk, sys

if len(sys.argv) != 7:
    print("Usage: " + sys.argv[0] + " <inputImagePath> <maskImagePath>"
                                    " <NumberOfBinsPerAxis> <PixelValueMin> "
                                    "<PixelValueMax> <NeighborhoodRadius>")
    sys.exit(1)

im = itk.imread(sys.argv[1])
maskReader = itk.ImageFileReader.IUC3.New()

jbvimort

import os
import csv
import re

dataDir = "/home/jean-baptiste/Documents/4Neighborhood/CSVfeatureMaps/"
with open('trainingData.csv', 'w') as csvWritefile:
    fieldnames = ['ID', 'Energy', 'Entropy', 'Correlation', 'InverseDifferenceMoment','Inertia', 'ClusterShade',
                  'ClusterProminence', 'HarralickCorrelation','ShortRunEmphasis', 'LongRunEmpasis','GreyLevelNonUniformity',
                  'RunLengthNonUniformity','LowGreyLevelRunEmphasis', 'HighGreyLevelRunEmphasis',
                  'ShortRunLowGreyLevelEmphasis', 'ShortRunHighGreyLevelEmphasis','LongRunLowGreyLevelEmphasis', 'LongRunHighGreyLevelEmphasis']

jbvimort

from __main__ import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *

class dumyExtenction(ScriptedLoadableModule):
  """Uses ScriptedLoadableModule base class, available at:
  https://github.com/Slicer/Slicer/blob/master/Base/Python/slicer/ScriptedLoadableModule.py
  """

  def __init__(self, parent):
    ScriptedLoadableModule.__init__(self, parent)

jbvimort

import os
import unittest
from __main__ import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
import json

#
# dumyExtenction
#

jbvimort

import os
import unittest
from __main__ import vtk, qt, ctk, slicer
from slicer.ScriptedLoadableModule import *
import json

#
# dataStructureExemple
#

jbvimort

{
  "fiducials":{
    "IDofFiducial1":{
      "midpoint":{
        "IsAMidPoint":false,
        "points":null
      },
      "projection":{
        "isProjected":true,
        "indexClosestPoint":32