AMIDST_notes

# AMIDST Notes

mvn clean dependency:copy-dependencies package

## core

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.learning.parametric.bayesian.DriftSVB

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.learning.parametric.bayesian.MultiDriftSVB

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.messagepassing.VMP

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.ImportanceSamplingRobust

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.ImportanceSampling

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.MAPInference

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.InferenceEngine

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.utils.BayesianNetworkGenerator

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.utils.BayesianNetworkSampler

java -Xmx5G -cp .:./core/target/*:./core/target/dependency/* eu.amidst.core.utils.ReservoirSampling
(no output)

java -Xmx5G -cp ./core/target/*:./core/target/dependency/* eu.amidst.core.inference.MPEInference
(changed location of asia.bn to ./networks/dataWeka/asia.bn)

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.classifiers.NaiveBayesClassifierDemo

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.conceptdrift.NaiveBayesVirtualConceptDriftDetectorExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.conceptdrift.MaximimumLikelihoodFadingExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.conceptdrift.SVBFadingExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.datastream.DataStreamsExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.inference.ImportanceSamplingExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.inference.MAPInferenceExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.inference.MPEInferenceExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.inference.InferenceEngineExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.inference.VMPExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.io.BayesianNetworkIOExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.io.DataStreamIOExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.learning.MaximimumLikelihoodByBatchExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.learning.ParallelSVBExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.learning.SVBExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.learning.ParallelMaximumLikelihoodExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.learning.SVBByBatchExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.models.CreatingBayesianNetworks

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.models.CreatingBayesianNetworksWithLatentVariables

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.models.ModifiyingBayesianNetworks

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.models.CreatingBayesianNetworks

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.utils.BayesianNetworkSamplerExample
(no output)

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.core.examples.utils.ReservoirSampleExample
(no output)

## core-dynamic

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.learning.parametric.DynamicNaiveBayesClassifier

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.inference.DynamicVMP

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.inference.DynamicMAPInference

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.inference.FactoredFrontierForDBN

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.utils.DynamicBayesianNetworkGenerator

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.utils.DynamicToStaticBNConverter

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.datastream.DataStreamsExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.inference.DynamicIS_Scalability

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.inference.DynamicVMP_FactoredFrontier

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.inference.DynamicIS_FactoredFrontier

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.learning.MLforDBNfromDataset

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.learning.MLforDBNsampling

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.learning.SVBforDBN

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.variables.DynamicVariablesExample

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.multicore.ParallelMLExample
java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.multicore.ParallelStreamExample

## BCC

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.bnaic2015.examples.BCC

## models

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.DaimlerModels

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.CajaMarModels

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.VerdandeModels

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.CreatingDBNs

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.CreatingDBNsWithLatentVariables

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.ModifyingDBNs

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.models.DynamicNaiveBayesClassifierDemo

## latentvariablemodels

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.FactorAnalysis

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.GaussianMixture

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.CustomGaussianMixture

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.BayesianLinearRegression

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.MixtureOfFactorAnalysers

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.GaussianDiscriminantAnalysis

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.HODE

java -Xmx5G -cp ./latent-variable-models/target/*::./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.AODE

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.LatentClassificationModel

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.NaiveBayesClassifier

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.SwitchingKalmanFilter

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.InputOutputHMM

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.FactorialHMM

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.KalmanFilter

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.AutoRegressiveHMM

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.HiddenMarkovModel

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.dynamicmodels.classifiers.DynamicLatentClassificationModel

java -Xmx5G -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.ConceptDriftDetector
(changed setIndexClass to 3 for sea.arff)

## weka 3.8 and moa 2013

java -Xmx5G -cp /home/jdevoo/lib/weka-3-8-1/weka.jar:./wekalink/target/*:./wekalink/target/dependency/* weka.gui.GUIChooser

java -cp /home/jdevoo/lib/moa-release-2013.11/moa.jar:./moalink/target/*:./moalink/target/dependency/* -javaagent:/home/jdevoo/lib/moa-release-2013.11/sizeofag.jar moa.gui.GUI

## issues

java -Xmx5G -cp ./examples/target/*:./examples/target/dependency/* eu.amidst.dynamic.examples.inference.DynamicMAPInference
MAP sequence over ClassVar:
Exception in thread "main" java.lang.NullPointerException
        at eu.amidst.dynamic.examples.inference.DynamicMAPInference.main(DynamicMAPInference.java:128) 

java -Xmx5G -Djava.library.path=./huginlink/huginlib/ -cp ./latent-variable-models/target/*:./latent-variable-models/target/dependency/* eu.amidst.latentvariablemodels.staticmodels.classifiers.TAN

java -Xmx5G -cp ./core-dynamic/target/*:./core-dynamic/target/dependency/* eu.amidst.dynamic.utils.DynamicBayesianNetworkSampler
Exception in thread "main" java.lang.NullPointerException
	at eu.amidst.dynamic.datastream.DynamicDataInstance.outputString(DynamicDataInstance.java:115)
	at eu.amidst.dynamic.utils.DynamicBayesianNetworkSampler.main(DynamicBayesianNetworkSampler.java:418)