Supporting files on phylesystem-1 (Sept 4, 2014)

gistfile1.txt

http://tree.opentreeoflife.org/curator/study/view/ot_22/?tab=files
    This is a test study; both files return 404.


In all cases below, we see the same symptoms:
    > There are two annotations for each supporting file.
    > One annotation has no @url, the other has a sensible URL.
    > The link shown in the Files tab doesn't work (presumably 
      it's using the wrong annotation).
    

http://tree.opentreeoflife.org/curator/study/view/ot_130/?tab=files
  > Dorippidae_nex_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u9d47f3d5-4d82-4f1a-8ac3-b10c948d904f


http://tree.opentreeoflife.org/curator/study/view/ot_75/?tab=files
  > Heterosaccus_Data_2008_nxs_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u2b007efe-d32b-43f4-8d82-54b538ae9c65


http://tree.opentreeoflife.org/curator/study/view/ot_194/?tab=files
  > Buhay_2007_edited.tre
    /curator/default/to_nexson?output=input&uploadid=ubf21c8be-0f2b-4b1c-9014-523910cff9f4


http://tree.opentreeoflife.org/curator/study/view/ot_187/?tab=files
  > Che1_nex_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u62371703-880d-4181-8af2-42d4542ff85d


http://tree.opentreeoflife.org/curator/study/view/ot_196/?tab=files
  > Buhay_2008_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u811d870f-b11c-4d89-a711-00ee72ba9039


http://tree.opentreeoflife.org/curator/study/view/ot_201/?tab=files
  > Fratini_2005_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u1413b66b-ce04-4f5a-bdc6-0eb8874366c0


http://tree.opentreeoflife.org/curator/study/view/ot_184/?tab=files
  > Gale_nex_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u202b239d-4c66-4e31-8b35-4868a415eba4


http://tree.opentreeoflife.org/curator/study/view/ot_203/?tab=files
  > Trontelj_2005_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u0027fa5e-f6b1-433f-a589-1f160a6811a7


http://tree.opentreeoflife.org/curator/study/view/ot_202/?tab=files
  > Munasinghe_2003_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u5ce06f3b-86b6-49c4-98cb-b501bdfca89e

    
http://tree.opentreeoflife.org/curator/study/view/ot_71/?tab=files
  > Cthtamalophilus_2010_edited_newick_con.tre
      /curator/default/to_nexson?output=input&uploadid=uc808a56e-b838-4c9e-a0fd-767e427729fc


http://tree.opentreeoflife.org/curator/study/view/ot_83?tab=files
  > diversification_of_crayfish_newick2.tre
      /curator/default/to_nexson?output=input&uploadid=u510d7bc3-79df-4ea4-b214-053002a58ce3


http://tree.opentreeoflife.org/curator/study/view/ot_190?tab=files
  > RAxML_bipartitions_ananinsp_EDITED3.tre
    /curator/default/to_nexson?output=input&uploadid=ucddef1a2-5af3-458d-b822-32c0922c2d24


http://tree.opentreeoflife.org/curator/study/view/ot_189?tab=files
  > COI_16S_THAU_nex_con_edited2.tre
    /curator/default/to_nexson?output=input&uploadid=u1f177a0a-31ce-45d9-84ab-a35d00c65ca0


http://tree.opentreeoflife.org/curator/study/view/ot_195?tab=files
  > Buhay_2009_edited.tre
    /curator/default/to_nexson?output=input&uploadid=ub734cc0b-7594-46d9-bcd1-a8559c3a8f5f
    

http://tree.opentreeoflife.org/curator/study/view/ot_199?tab=files
  > Taylor2002_edited.tre
    /curator/default/to_nexson?output=input&uploadid=ubbedcdb6-d5ec-4ab5-b43e-5ad5a0dba9a8


http://tree.opentreeoflife.org/curator/study/view/ot_204?tab=files
  > Crandall_et_al_2000_monophyletic_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u2514c7a8-e8a4-4c0d-a932-66921d4346de


http://tree.opentreeoflife.org/curator/study/view/ot_206?tab=files
  > Pedraza_2013_edited.tre
    /curator/default/to_nexson?output=input&uploadid=uf6f2613c-8f92-4f01-991c-0e17663890c6


http://tree.opentreeoflife.org/curator/study/view/ot_132?tab=files
  > ML_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u92c38ff1-1aff-429f-81e8-0b92b3a142ab


http://tree.opentreeoflife.org/curator/study/view/ot_100?tab=files
  > Palinuridae bayesian consensus_con_edited2.tre
    /curator/default/to_nexson?output=input&uploadid=u226f995a-efbc-448b-973f-a2c29867bc39


http://tree.opentreeoflife.org/curator/study/view/ot_114?tab=files
  > Penaeus_sl Bayesian consensus_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u885e99dc-2b61-47d4-b73b-b555027f4589


http://tree.opentreeoflife.org/curator/study/view/ot_74?tab=files
  > Rhizo_Global_2006_nex_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=uc59f5ecc-edff-490c-a870-e2e5b55bdd89


http://tree.opentreeoflife.org/curator/study/view/ot_186?tab=files 
  > comb_nex_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u9e5e96a5-3456-4c30-8cf7-1c4f94914c22


http://tree.opentreeoflife.org/curator/study/view/ot_207?tab=files
  > AToL_caridea bayesian_edited3.tre
    /curator/default/to_nexson?output=input&uploadid=ueb2d16d2-7769-43ec-81a1-c04dcdb00bd8


http://tree.opentreeoflife.org/curator/study/view/ot_205?tab=files
  > Rudolph_Crandall_16s_gtr_tree4.tre
    /curator/default/to_nexson?output=input&uploadid=u7faa4ca9-ab43-4183-b7eb-7f0592691f9c


http://tree.opentreeoflife.org/curator/study/view/ot_131?tab=files
  > BI_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u5ff1a8b1-3b55-488e-8a3c-1738d3fe19f8


http://tree.opentreeoflife.org/curator/study/view/ot_141?tab=files
  > Lasley_etal_2013_MB_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u14178c6b-6f22-480f-ab0c-b8dba378c08b


http://tree.opentreeoflife.org/curator/study/view/ot_143?tab=files
  > Lai_etal_2014_Mb_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u6e049331-af9a-4ef9-9cd1-3d77fb790fce


http://tree.opentreeoflife.org/curator/study/view/ot_115?tab=files
  > Penaeoidea Bayesian consensus_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u75a15746-c27d-4ac0-8742-6edf07d1894a


http://tree.opentreeoflife.org/curator/study/view/ot_76?tab=files
  > Fig2_BI_newick_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u09a024f0-3474-4b49-8794-8066b95e63d2


http://tree.opentreeoflife.org/curator/study/view/ot_84?tab=files
  > shull_et_al_2005_newick2.tre
    /curator/default/to_nexson?output=input&uploadid=uc65b87d2-6a9a-47d9-beca-c2fc57789a9b


http://tree.opentreeoflife.org/curator/study/view/ot_200?tab=files
  > Crandall_et_al_2000_southamerica_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u7dc2884a-3cf8-4489-a3fc-227ed45c90b6


http://tree.opentreeoflife.org/curator/study/view/ot_198?tab=files
  > Rode_Babcock_tree_edited.tre
    /curator/default/to_nexson?output=input&uploadid=uae0bcac1-73d8-4434-bd5a-25770d146329


http://tree.opentreeoflife.org/curator/study/view/ot_208?tab=files
  > hippo_ML_best_edited.tre
    /curator/default/to_nexson?output=input&uploadid=ud0346e4b-d7c8-4683-889b-d2d7c2f70089


http://tree.opentreeoflife.org/curator/study/view/ot_134?tab=files
  > PinnosEmmaRAxML_bestTree_Job_9274_edited.tre
    Just one annotion for this one, and NO URL FOUND!
  > PinnosEmmaRAxML_bestTree_Job_9274_edited2.tre
    /curator/default/to_nexson?output=input&uploadid=ub89c4da7-cf9b-4b05-af39-bb50a1a25f7e


http://tree.opentreeoflife.org/curator/study/view/ot_39?tab=files
  > Gymnophiona Sherratt et al 2014 Evo Biol.nex
    /curator/default/to_nexson?output=input&uploadid=u47378713-35b5-42d9-aa3c-f66e76ce058f 
  > [undefined] (NO FILENAME FOUND)
    /curator/supporting_files/download/supporting_files.doc.96cf638f5abeffd4.756e646566696e6564.txt


http://tree.opentreeoflife.org/curator/study/view/ot_133?tab=files
  > Mithracidae_edited2.tre
    /curator/default/to_nexson?output=input&uploadid=u1f17ec9c-737c-4dbc-b9ea-009a6ecc2a17


http://tree.opentreeoflife.org/curator/study/view/ot_163?tab=files
  > TOSHARE_PYRGO_RAxMLv8_bipartitions_GTRGAMMAI_result.tre	
    /curator/default/to_nexson?output=input&uploadid=u424da336-13e8-4e7d-b2f8-204016f52bc0


http://tree.opentreeoflife.org/curator/study/view/ot_62?tab=files
  > unlabeled-internal-nodes.tre
    /curator/default/to_nexson?output=input&uploadid=udce89894-7e7f-4c4c-a73c-3b2a3b379216
  > Species names file concatenated align.docx
    /curator/supporting_files/download/supporting_files.doc.aef24858b53d371e.53706563696573206e616d65732066696c6520636f6e636174656e6174656420616c69676e2e646f6378.docx


http://tree.opentreeoflife.org/curator/study/view/ot_135?tab=files
  > Thoma_etal_2014_MB_Tree_edited.tre
    /curator/default/to_nexson?output=input&uploadid=u5cda95fc-6152-4977-abfc-9ae74c8ed873


http://tree.opentreeoflife.org/curator/study/view/ot_193?tab=files
  > Munida16SCOITW_by_nex_con_edited3.tre
    /curator/default/to_nexson?output=input&uploadid=u343af232-d510-4332-97cc-d503f6273a4a


http://tree.opentreeoflife.org/curator/study/view/ot_99?tab=files
  > Brachyura_Bayesian_consensus_tree_con_edited.tre
    /curator/default/to_nexson?output=input&uploadid=ue3c61b8d-fe0e-45d3-96ae-7cd75a939e5c


http://tree.opentreeoflife.org/curator/study/view/ot_191?tab=files
  > prun10.boottree.tnt2.tre
    /curator/default/to_nexson?output=input&uploadid=ua1df2296-4dc2-4471-bab5-3f0e7775e605