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jimrybarski/cheeseburger.py

Last active August 29, 2015 14:12
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cheeseburger.py
import os, skimage.io, skimage.exposure, numpy
for dir_name, dir_names, filenames in os.walk("/home/jim/Desktop/experiments/141111/kymograph"):
for image_name in filenames:
filename = "/".join([dir_name, image_name])
original_image = skimage.io.imread(filename)
enhanced_image = skimage.exposure.rescale_intensity(original_image, in_range=tuple(numpy.percentile(original_image, (2, 98))))
skimage.io.imsave(filename.split(".")[0] + "_enhanced.png", enhanced_image)
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