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Created Sep 21, 2016
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Mac OS X El Capitan conda-lsst lsst-ndarray test failure.
Removing old build environment
Removing old work directory
BUILD START: lsst-ndarray-1.2.0.1-0
Fetching package metadata .........
WARNING: conda-build appears to be out of date. You have version 1.20.0 but the
latest version is 2.0.1. Run
conda update -n root conda-build
to get the latest version.
Solving package specifications: ..........
Cloning into '/Users/square/dev/conda-lsst/miniconda/conda-bld/work'...
done.
Note: checking out 'f968e944ffa8c773c3804511af019d8d1c7fcf32'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b <new-branch-name>
HEAD is now at f968e94... Merge pull request #5 from lsst/tickets/DM-7653
++ git rev-parse --show-toplevel
+ export SRC_DIR=/Users/square/dev/conda-lsst/miniconda/conda-bld/work
+ SRC_DIR=/Users/square/dev/conda-lsst/miniconda/conda-bld/work
+ cd /Users/square/dev/conda-lsst/miniconda/conda-bld/work
+ [[ darwin15 == darwin* ]]
+ export MACOSX_DEPLOYMENT_TARGET=
+ MACOSX_DEPLOYMENT_TARGET=
+ export CMAKE_OSX_SYSROOT=/
+ CMAKE_OSX_SYSROOT=/
+ export 'LDFLAGS= -arch x86_64 -headerpad_max_install_names'
+ LDFLAGS=' -arch x86_64 -headerpad_max_install_names'
++ ld -v
++ grep -Eow 'PROJECT:.*'
+ [[ PROJECT:ld64-274.1 == \P\R\O\J\E\C\T\:\l\d\6\4\-\2\6\4\.\3\.\1\0\1 ]]
+ [[ darwin15 == darwin* ]]
+ export DYLD_FALLBACK_LIBRARY_PATH=:/Users/square/dev/conda-lsst/miniconda/envs/_build/lib
+ DYLD_FALLBACK_LIBRARY_PATH=:/Users/square/dev/conda-lsst/miniconda/envs/_build/lib
++ basename ups/ndarray.table .table
+ PRODUCT=ndarray
+ EUPS_VERSION=1.2.0.lsst1
+ PREFIX=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/ndarray
+ source eups-setups.sh
++ export EUPS_SHELL=sh
++ EUPS_SHELL=sh
++ export EUPS_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups
++ EUPS_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups
+++ /Users/square/dev/conda-lsst/miniconda/envs/_build/bin/python -E -S -c '
from __future__ import print_function
import sys
pp = []
for d in sys.argv[1].split(":"):
if d and d not in pp:
pp += [d]
if not sys.argv[2] in pp:
pp = [sys.argv[2]] + pp
print(":".join(pp))' '' /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups
++ export EUPS_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups
++ EUPS_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups
+++ /Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin/eups_setup DYLD_LIBRARY_PATH= eups -r /Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups
++ eval export 'PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin;' export 'PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python;' export 'SETUP_EUPS='\''eups' LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f DarwinX86 -Z '(none)'\'';' 'setup()' '{' eval '`/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin/eups_setup' 'DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}' '"$@"`' ';' '};' 'unsetup()' '{' eval '`/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin/eups_setup' 'DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}' --unsetup '"$@"`' ';' '}'
+++ export PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
+++ PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
+++ export PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python
+++ PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python
+++ export 'SETUP_EUPS=eups LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f DarwinX86 -Z (none)'
+++ SETUP_EUPS='eups LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f DarwinX86 -Z (none)'
++ export 'SETUP_EUPS=eups LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f (none) -Z (none)'
++ SETUP_EUPS='eups LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f (none) -Z (none)'
++ '[' X '!=' X -a -f /Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/etc/bash_completion.d/eups ']'
+ eupspkg PREFIX=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/ndarray PRODUCT=ndarray VERSION=1.2.0.lsst1 FLAVOR=generic prep
eupspkg.prep: unpacking upstream/ndarray-1.2.0.tar.gz ...
+ eups list
boost 1.60.lsst1 current conda
eigen 3.2.5.lsst2 current conda
fftw 3.3.4.lsst2 current conda
numpy system current conda
python system current conda
swig system current conda
+ setup -r .
++ /Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin/eups_setup DYLD_LIBRARY_PATH= -r .
+ eval export 'SETUP_EIGEN='\''eigen' 3.2.5.lsst2 -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'SETUP_NUMPY='\''numpy' system -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'LD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib;' export 'LSST_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib;' export 'SETUP_BOOST='\''boost' 1.60.lsst1 -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'SETUP_NDARRAY='\''ndarray' LOCAL:/Users/square/dev/conda-lsst/miniconda/conda-bld/work -f DarwinX86 -Z '(none)'\'';' export 'SETUP_FFTW='\''fftw' 3.3.4.lsst2 -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/conda-bld/work/python:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python;' export 'SETUP_SWIG='\''swig' system -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'DYLD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib;' export 'PYTHON_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/python;' export 'FFTW_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw;' export 'PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin;' export 'NDARRAY_DIR=/Users/square/dev/conda-lsst/miniconda/conda-bld/work;' export 'SETUP_PYTHON='\''python' system -f DarwinX86 -Z '/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'\'';' export 'NUMPY_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/numpy;' export 'SWIG_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig;' export 'BOOST_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost;' export EIGEN_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/eigen
++ export 'SETUP_EIGEN=eigen 3.2.5.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_EIGEN='eigen 3.2.5.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export 'SETUP_NUMPY=numpy system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_NUMPY='numpy system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export LD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ LD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ export LSST_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ LSST_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ export 'SETUP_BOOST=boost 1.60.lsst1 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_BOOST='boost 1.60.lsst1 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export 'SETUP_NDARRAY=ndarray LOCAL:/Users/square/dev/conda-lsst/miniconda/conda-bld/work -f DarwinX86 -Z (none)'
++ SETUP_NDARRAY='ndarray LOCAL:/Users/square/dev/conda-lsst/miniconda/conda-bld/work -f DarwinX86 -Z (none)'
++ export 'SETUP_FFTW=fftw 3.3.4.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_FFTW='fftw 3.3.4.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/conda-bld/work/python:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python
++ PYTHONPATH=/Users/square/dev/conda-lsst/miniconda/conda-bld/work/python:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python
++ export 'SETUP_SWIG=swig system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_SWIG='swig system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export DYLD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ DYLD_LIBRARY_PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib
++ export PYTHON_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/python
++ PYTHON_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/python
++ export FFTW_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw
++ FFTW_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw
++ export PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
++ PATH=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin
++ export NDARRAY_DIR=/Users/square/dev/conda-lsst/miniconda/conda-bld/work
++ NDARRAY_DIR=/Users/square/dev/conda-lsst/miniconda/conda-bld/work
++ export 'SETUP_PYTHON=python system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ SETUP_PYTHON='python system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups'
++ export NUMPY_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/numpy
++ NUMPY_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/numpy
++ export SWIG_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig
++ SWIG_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig
++ export BOOST_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost
++ BOOST_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost
++ export EIGEN_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/eigen
++ EIGEN_DIR=/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/eigen
+ export
declare -x ARCH="64"
declare -x BOOST_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost"
declare -x CFLAGS=" -arch x86_64"
declare -x CMAKE_OSX_SYSROOT="/"
declare -x CONDA_BUILD="1"
declare -x CONDA_DEFAULT_ENV="/Users/square/dev/conda-lsst/miniconda/envs/_build"
declare -x CPU_COUNT="8"
declare -x CXXFLAGS=" -arch x86_64"
declare -x DYLD_FALLBACK_LIBRARY_PATH=":/Users/square/dev/conda-lsst/miniconda/envs/_build/lib"
declare -x DYLD_LIBRARY_PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib"
declare -x EIGEN_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/eigen"
declare -x EUPS_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups"
declare -x EUPS_PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x EUPS_SHELL="sh"
declare -x FFTW_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw"
declare -x GIT_BUILD_STR="0_gf968e94"
declare -x GIT_DESCRIBE_HASH="gf968e94"
declare -x GIT_DESCRIBE_NUMBER="0"
declare -x GIT_DESCRIBE_TAG="1.2.0.lsst1"
declare -x GIT_FULL_HASH="f968e944ffa8c773c3804511af019d8d1c7fcf32"
declare -x HOME="/Users/square"
declare -x LDFLAGS=" -arch x86_64 -headerpad_max_install_names"
declare -x LD_LIBRARY_PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib"
declare -x LSST_LIBRARY_PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/lib:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/lib"
declare -x LUA="/Users/square/dev/conda-lsst/miniconda/envs/_build/bin/lua"
declare -x LUA_INCLUDE_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/include"
declare -x LUA_VER="5.2"
declare -x MACOSX_DEPLOYMENT_TARGET=""
declare -x NDARRAY_DIR="/Users/square/dev/conda-lsst/miniconda/conda-bld/work"
declare -x NUMPY_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/numpy"
declare -x OLDPWD="/Users/square/dev/conda-lsst/miniconda/conda-bld/work"
declare -x OSX_ARCH="x86_64"
declare -x PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/boost/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/bin:/Users/square/dev/conda-lsst/miniconda/envs/_build/bin:/Users/square/dev/conda-lsst/bin:/Users/square/dev/conda-lsst/miniconda/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin"
declare -x PERL_VER="5.18.2"
declare -x PKG_BUILDNUM="0"
declare -x PKG_BUILD_STRING="0"
declare -x PKG_CONFIG_PATH="/Users/square/dev/conda-lsst/miniconda/envs/_build/lib/pkgconfig"
declare -x PKG_NAME="lsst-ndarray"
declare -x PKG_VERSION="1.2.0.1"
declare -x PREFIX="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/ndarray"
declare -x PWD="/Users/square/dev/conda-lsst/miniconda/conda-bld/work"
declare -x PY3K="0"
declare -x PYTHON="/Users/square/dev/conda-lsst/miniconda/envs/_build/bin/python"
declare -x PYTHONNOUSERSITE="1"
declare -x PYTHONPATH="/Users/square/dev/conda-lsst/miniconda/conda-bld/work/python:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups/python"
declare -x PYTHON_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/python"
declare -x PY_VER="2.7"
declare -x R="/Users/square/dev/conda-lsst/miniconda/envs/_build/bin/R"
declare -x RECIPE_DIR="/Users/square/dev/conda-lsst/recipes/lsst-ndarray"
declare -x SETUP_BOOST="boost 1.60.lsst1 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SETUP_EIGEN="eigen 3.2.5.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SETUP_EUPS="eups LOCAL:/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/eups -f (none) -Z (none)"
declare -x SETUP_FFTW="fftw 3.3.4.lsst2 -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SETUP_NDARRAY="ndarray LOCAL:/Users/square/dev/conda-lsst/miniconda/conda-bld/work -f DarwinX86 -Z (none)"
declare -x SETUP_NUMPY="numpy system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SETUP_PYTHON="python system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SETUP_SWIG="swig system -f DarwinX86 -Z /Users/square/dev/conda-lsst/miniconda/envs/_build/var/opt/eups"
declare -x SHLVL="1"
declare -x SP_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages"
declare -x SRC_DIR="/Users/square/dev/conda-lsst/miniconda/conda-bld/work"
declare -x STDLIB_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7"
declare -x SWIG_DIR="/Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/swig"
declare -x SYS_PREFIX="/Users/square/dev/conda-lsst/miniconda"
declare -x SYS_PYTHON="/Users/square/dev/conda-lsst/miniconda/bin/python"
+ cat
++ export
+ chmod +x _build.sh
+ ./_build.sh config
+ ./_build.sh build
-- The C compiler identification is AppleClang 8.0.0.8000038
-- The CXX compiler identification is AppleClang 8.0.0.8000038
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PythonInterp: /Users/square/dev/conda-lsst/miniconda/envs/_build/bin/python (found version "2.7.12")
-- Found PythonLibs: /Users/square/dev/conda-lsst/miniconda/envs/_build/lib/libpython2.7.dylib (found version "2.7.12")
-- Found NumPy: version "1.10.4" /Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages/numpy/core/include
-- Boost version: 1.60.0
-- Found the following Boost libraries:
-- unit_test_framework
-- Found PkgConfig: /usr/local/bin/pkg-config (found version "0.29.1")
-- Found FFTW: /Users/square/dev/conda-lsst/miniconda/envs/_build/opt/lsst/fftw/include
-- Found SWIG: /Users/square/dev/conda-lsst/miniconda/envs/_build/bin/swig (found version "3.0.10")
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/square/dev/conda-lsst/miniconda/conda-bld/work/build
Scanning dependencies of target preprocess_includes
[ 6%] Generating ../../include/ndarray/ArrayRef.h
[ 12%] Generating ../../include/ndarray/ArrayBaseN.h
[ 18%] Generating ../../include/ndarray/operators.h
[ 25%] Generating ../../include/ndarray/Vector.h
[ 31%] Generating ../../include/ndarray/fft/FFTWTraits.h
[ 31%] Built target preprocess_includes
Scanning dependencies of target ndarray-eigen
[ 37%] Building CXX object tests/CMakeFiles/ndarray-eigen.dir/ndarray-eigen.cc.o
[ 43%] Linking CXX executable ndarray-eigen
[ 43%] Built target ndarray-eigen
Scanning dependencies of target ndarray
[ 50%] Building CXX object tests/CMakeFiles/ndarray.dir/ndarray.cc.o
[ 56%] Linking CXX executable ndarray
[ 56%] Built target ndarray
[ 62%] Swig source
Scanning dependencies of target _swig_test_mod
[ 68%] Building CXX object tests/CMakeFiles/_swig_test_mod.dir/swig_test_modPYTHON_wrap.cxx.o
In file included from /Users/square/dev/conda-lsst/miniconda/conda-bld/work/build/tests/swig_test_modPYTHON_wrap.cxx:3117:
In file included from /Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1781:
/Users/square/dev/conda-lsst/miniconda/envs/_build/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
^
1 warning generated.
[ 75%] Linking CXX shared module _swig_test_mod.so
[ 75%] Built target _swig_test_mod
Scanning dependencies of target ndarray-fft
[ 81%] Building CXX object tests/CMakeFiles/ndarray-fft.dir/ndarray-fft.cc.o
[ 87%] Linking CXX executable ndarray-fft
[ 87%] Built target ndarray-fft
Scanning dependencies of target views
[ 93%] Building CXX object tests/CMakeFiles/views.dir/views.cc.o
[100%] Linking CXX executable views
[100%] Built target views
Running tests...
Test project /Users/square/dev/conda-lsst/miniconda/conda-bld/work/build
Start 1: test_ndarray
1/5 Test #1: test_ndarray ..................... Passed 0.01 sec
Start 2: test_views
2/5 Test #2: test_views ....................... Passed 0.01 sec
Start 3: test_ndarray-fft
3/5 Test #3: test_ndarray-fft .................***Exception: Other 0.00 sec
Start 4: test_ndarray_eigen
4/5 Test #4: test_ndarray_eigen ............... Passed 0.01 sec
Start 5: swig_test
5/5 Test #5: swig_test ........................ Passed 0.11 sec
80% tests passed, 1 tests failed out of 5
Total Test time (real) = 0.14 sec
The following tests FAILED:
3 - test_ndarray-fft (OTHER_FAULT)
Errors while running CTest
make: *** [test] Error 8
The following NEW packages will be INSTALLED:
eups: 2.0.2-0 local
lsst-boost: 1.60.1-0 local
lsst-eigen: 3.2.5.2-0 local
lsst-fftw: 3.3.4.2-0 local
lsst-numpy-eups-configs: 0.0.3-0 local
lsst-python-eups-configs: 0.0.5-0 local
lsst-swig-eups-configs: 3.0.10-0 local
nomkl: 1.0-0
numpy: 1.10.4-py27_nomkl_2 [nomkl]
openssl: 1.0.2h-2
pcre: 8.39-0
pip: 8.1.2-py27_0
python: 2.7.12-1
readline: 6.2-2
setuptools: 27.2.0-py27_0
sqlite: 3.13.0-0
swig: 3.0.10-0 local
tk: 8.5.18-0
wheel: 0.29.0-py27_0
zlib: 1.2.8-3
Linking packages ...
[ ]| | 0%
[nomkl ]| | 0%
[openssl ]|## | 5%
[readline ]|##### | 10%
[sqlite ]|####### | 15%
[tk ]|########## | 20%
[zlib ]|############ | 25%
[pcre ]|############### | 30%
[python ]|################# | 35%
[eups ]|#################### | 40%
[numpy ]|###################### | 45%
[setuptools ]|######################### | 50%
[swig ]|########################### | 55%
[wheel ]|############################## | 60%
[lsst-eigen ]|################################ | 65%
[lsst-fftw ]|################################### | 70%
[lsst-python-eups-configs]|################################## | 75%
[lsst-swig-eups-configs]|###################################### | 80%
[pip ]|########################################## | 85%
[lsst-boost ]|############################################# | 90%
[lsst-numpy-eups-configs]|############################################ | 95%
[ COMPLETE ]|##################################################| 100%
Removing old work directory
checkout: u'f968e944ffa8c773c3804511af019d8d1c7fcf32'
==> git log -n1 <==
commit f968e944ffa8c773c3804511af019d8d1c7fcf32
Merge: 7d2d900 b0be579
Author: Pim Schellart <P.Schellart@princeton.edu>
Date: Sat Sep 17 13:05:15 2016 -0400
Merge pull request #5 from lsst/tickets/DM-7653
Remove LSST dependencies from build
==> git describe --tags --dirty <==
1.2.0.lsst1
==> git status <==
HEAD detached at f968e94
nothing to commit, working directory clean
Package: lsst-ndarray-1.2.0.1-0
source tree in: /Users/square/dev/conda-lsst/miniconda/conda-bld/work
Command failed: /bin/bash -x -e /Users/square/dev/conda-lsst/recipes/lsst-ndarray/build.sh
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