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jmchilton/pbsdebug.xml

Last active August 29, 2015 13:57
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Debug Galaxy tool for PBS/TORQUE GALAXY_SLOTS.
Raw
pbsdebug.xml
<tool id="pbsdebug" name="PBS DEBUG">
<command>
echo \$GALAXY_SLOTS > $out1;
env > $out3;
echo "No PBS_NODEFILE defined." > $out2;
if [ -f "\$PBS_NODEFILE" ]; then cp \$PBS_NODEFILE $out2; fi
</command>
<inputs>
</inputs>
<outputs>
<data format="txt" name="out1" label="Galaxy slots" />
<data format="txt" name="out2" label="PBS_NODEFILE contents" />
<data format="txt" name="out3" label="Cluster worker environment." />
</outputs>
</tool>
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