Joe Futrelle joefutrelle

## ifcb_packing.js
// now refactored as jquery plugin
(function($) {
    $.fn.extend({
        packedMultiImage: function(width, height) {
            return this.each(function() {
		var k = 4; // FIXME hardcoded
                var $this = $(this);
		// set up the rectangle packer
		var rootNode = new Node();
		rootNode.rect = new Rect(0, 0, width, height);

## sb.xml
<resolvers>
  <resolver name="pid">
    <var name="root">/mnt/svalbard/dives</var>
    <match var="pid" pattern="((([A-Z]+)\.)?((\d{6})\d\d)\.(\d+)\.(\d+))(\.(\w+))?"
	   groups="lid _ pfx ymd ym ts1 ts2 _ ext">
      <!-- high-priority cruises -->
      <match var="ym" value="200303">
	<path var="dir" match="${root}/200303_OC387/processed/color_corrected/*">
	  <path match="${dir}/${lid}.jpeg"/>
	</path>

## flatness3.ipynb

      
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                joefutrelle
                / flatness3.ipynb
            
            
              Created
              February 18, 2014 21:04
            
              
                lightfield flatness metrics
              
          
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## radix.py
DIGITS='0123456789ABCDEF'

k=34587
n=16

result = ''
while k > 0:
    digit = k % n
    result = DIGITS[digit] + result
    k = (k-digit) / n

## flatness4.ipynb

      
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                joefutrelle
                / flatness4.ipynb
            
            
              Created
              March 17, 2014 19:41
            
              
                large-scale lightmap flatness test and descriptive graphics
              
          
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## ifcb_segmentation.ipynb

      
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                joefutrelle
                / ifcb_segmentation.ipynb
            
            
              Last active
              August 29, 2015 13:57
            
              
                H. Sosik image segmentation workflow, Octave implementation
              
          
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## ns.py
from StringIO import StringIO
import xml.etree.ElementTree as ET

mvco_ns = 'http://ifcb-data.whoi.edu/mvco/'
lid = 'IFCB5_2011_033_041857'
nsmap = {'mvco': mvco_ns}

def parse_id(pfx_id, nsmap={}):
    ns_statements = ' '.join(['xmlns:%s="%s"' % (k,v) for k,v in nsmap.items()])
    xml = '<%s %s/>' % (pfx_id, ns_statements)

## IFCB scatter.ipynb

      
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                joefutrelle
                / IFCB scatter.ipynb
            
            
              Created
              October 23, 2014 17:16
            
              
                IFCB scatterplot
              
          
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## product_reorg.xml
<namespace name="ifcb.utils">
  <rule name="reorg_products" include="src dest">
    <invoke rule="ifcb.files.find_data_dirs"/>
    <!-- directory=product root dir, product=product type -->
    <any>
      <test var="product" eq="blobs">
	<path var="src" match="${directory}/[0-9]*/[0-9]*/*_blobs_v2.zip"/>
	<match var="src" pattern=".*/((.*_blobs).*)" groups="product_filename pid"/>
	<invoke rule="ifcb.pid"/>
      </test>

## ifcb_scraper.py
import os
import re
import time
from urllib2 import urlopen
import json

FEED_URL='http://ifcb-data.whoi.edu/mvco/feed.json'
DATA_DIR='/data'
FORMATS=('hdr','adc','roi')
	// now refactored as jquery plugin
	(function($) {
	$.fn.extend({
	packedMultiImage: function(width, height) {
	return this.each(function() {
	var k = 4; // FIXME hardcoded
	var $this = $(this);
	// set up the rectangle packer
	var rootNode = new Node();
	rootNode.rect = new Rect(0, 0, width, height);
	<resolvers>
	<resolver name="pid">
	<var name="root">/mnt/svalbard/dives</var>
	<match var="pid" pattern="((([A-Z]+)\.)?((\d{6})\d\d)\.(\d+)\.(\d+))(\.(\w+))?"
	groups="lid _ pfx ymd ym ts1 ts2 _ ext">
	<!-- high-priority cruises -->
	<match var="ym" value="200303">
	<path var="dir" match="${root}/200303_OC387/processed/color_corrected/*">
	<path match="${dir}/${lid}.jpeg"/>
	</path>
	DIGITS='0123456789ABCDEF'

	k=34587
	n=16

	result = ''
	while k > 0:
	digit = k % n
	result = DIGITS[digit] + result
	k = (k-digit) / n
	from StringIO import StringIO
	import xml.etree.ElementTree as ET

	mvco_ns = 'http://ifcb-data.whoi.edu/mvco/'
	lid = 'IFCB5_2011_033_041857'
	nsmap = {'mvco': mvco_ns}

	def parse_id(pfx_id, nsmap={}):
	ns_statements = ' '.join(['xmlns:%s="%s"' % (k,v) for k,v in nsmap.items()])
	xml = '<%s %s/>' % (pfx_id, ns_statements)
	<namespace name="ifcb.utils">
	<rule name="reorg_products" include="src dest">
	<invoke rule="ifcb.files.find_data_dirs"/>
	<!-- directory=product root dir, product=product type -->
	<any>
	<test var="product" eq="blobs">
	<path var="src" match="${directory}/[0-9]/[0-9]/*_blobs_v2.zip"/>
	<match var="src" pattern="./((._blobs).*)" groups="product_filename pid"/>
	<invoke rule="ifcb.pid"/>
	</test>
	import os
	import re
	import time
	from urllib2 import urlopen
	import json

	FEED_URL='http://ifcb-data.whoi.edu/mvco/feed.json'
	DATA_DIR='/data'
	FORMATS=('hdr','adc','roi')