I hereby claim:
- I am johanneskoester on github.
- I am johanneskoester (https://keybase.io/johanneskoester) on keybase.
- I have a public key ASBb4dzF5tXeo5pEdc9AHaGs9GITSHiltvp7FmnSTd_OKAo
To claim this, I am signing this object:
conf = ... # load the config file here | |
########### some helper functions to aggregate input files ########## | |
def prefix2samples(wildcards): | |
# retreive the treatment or control samples for the given prefix here | |
return expand("{sample}.bam", sample=...) |
settings: | |
default: | |
cufflinks: "--param1=20 ..." | |
other: | |
cufflinks: "--param1=15 ..." |
I hereby claim:
To claim this, I am signing this object:
filetypes: | |
# this directive automatically generates flags for each type that can be used in the rules below | |
fq="edam:format_1929" | |
fa="edam:format_1930" | |
bam="edam:format_2572" | |
rule bwa: | |
input: | |
fq("genome.fa"), |