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johnsolk / outfmt6_m8_NCBI_Blastheader.txt
Created January 19, 2018 20:45 — forked from Verrus/outfmt6_m8_NCBI_Blastheader.txt
NCBI Blast output header -outfmt 6 or -m8 header in tabular form
query_id subject_id pct_identity aln_length n_of_mismatches gap_openings q_start q_end s_start s_end e_value bit_score
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"""Function: Take in a dammit gff3, dammit fasta, dammit namemap.
Output gff3 and fasta with trinity names.
by Dr. Tessa Pierce
"""
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import sys
import os
import argparse