joshmoore

import omero
compounds = unwrap(q.projection(("select distinct mv1.value, mv2.value from Image i "
                           "join i.annotationLinks l1 join l1.child as a1 join a1.mapValue as mv1 "
                           "join i.annotationLinks l2 join l2.child as a2 join a2.mapValue as mv2 "
              "join i.wellSamples ws join ws.well w join w.plate p "
              "where p.id = 4403 and mv1.name = 'Product Use Annotation' and mv2.name = 'Compound Name'"), None))

joshmoore

FROM java:8-jdk

ENV OMERO_URL https://downloads.openmicroscopy.org/omero/5.3.2/artifacts/OMERO.java-5.3.2-ice36-b62.zip

RUN curl -A Docker "$OMERO_URL" > /tmp/omero.zip \
 && unzip -qd /opt /tmp/omero.zip \
 && ln -s /opt/OMERO.java* /opt/omero \
 && test -e /opt/omero \
 && rm /tmp/omero.zip

joshmoore

% init (Move this file into the OMERO.matlab toolbox)
clear all;close all;

% import classes
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;

joshmoore

FROM jupyter/datascience-notebook:latest

MAINTAINER ome-devel@lists.openmicroscopy.org.uk

################################################################################
# Custom
################################################################################

USER root

joshmoore

Keybase proof

I hereby claim:

• I am joshmoore on github.
• I am joshmoore (https://keybase.io/joshmoore) on keybase.
• I have a public key whose fingerprint is 94F3 B57B 2F45 CA90 3700 6EA8 7025 B59F F45A 6403

To claim this, I am signing this object:

joshmoore

public class Options {
    public static void main(String[] args) {
        new Consumer1();
        new Consumer2();
        new Consumer3();
        new Consumer4();
        new Consumer5();
        new Consumer6();
        new Consumer7();
        new Consumer8();

joshmoore

5.0.8 Release Insight\r\nServer: Octopus, latest.\r\nJava(TM) SE Runtime Environment (build 1.7.0_51-b13)\r\nJava HotSpot(TM) 64-Bit Server VM (build 24.51-b03, mixed mode)\r\n\r\nI can replicate this, Simon can't. Not sure if it's something specific to my machine / Java install.\r\n\r\nWorkflow:\r\n\r\nLog in as admin\r\nOpen an image in the full viewer (used a 'big' Ray jpeg in dataset 'downloads')\r\nClick the ROI tool button\r\nDraw a rectangular ROI (don't save!)\r\nClose the full viewer\r\n  presented with a dialogue box to save the changes to the ROIs.\r\n  Press Yes, Boom.\r\n\r\n\r\nOSX Dialogue: `Main quit unexpectedly`\r\n\r\n{{{\r\n\r\nProcess:         OMERO.insight [13048]\r\nPath:            /Applications/OMERO.insight-5.0.8-ice35-b60-mac_Java7+/OMERO.insight.app/Contents/MacOS/OMERO.insight\r\nIdentifier:      org.openmicroscopy.insight\r\nVersion:         5.0.8-ice35-b60 (5.0.8-ice35-b60)\r\nCode Type:       X86-64 (Native)\r\nParent Process:  launchd [655]\r\nResponsible:     OMERO.insight [1

joshmoore

#!/usr/bin/env python

from argparse import ArgumentParser
from fileinput import input
from sys import argv
from sys import exit
from sys import stdout
from sys import stderr
from time import time

joshmoore

#!/usr/bin/env python

from os.path import exists

import os
import sys
import fileinput

DIST = "/opt/omero/omero/OMERO-CURRENT/lib/python"
DIST = os.environ.get("OMERO_DIST", DIST)

joshmoore

plate1_3_003:
  00088:
    T00015__O0005:
      Frame: [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,
        32, 33, 34, 35, 36]
      Timestamp: [7682.0, 8193.0, 8704.0, 9217.0, 9724.0, 10234.0, 10745.0, 11255.0,
        11764.0, 12273.0, 12781.0, 13289.0, 13801.0, 14310.0, 14821.0, 15332.0, 15842.0,
        16353.0, 16865.0, 17375.0, 17884.0, 18397.0]
      isEvent: [0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
      isSplit: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]