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Last active October 25, 2018 02:09
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How to get started in BacArena
#
# Doing a simple simulation using the E. coli model (iJO1366)
#
library(BacArena)
data(bcoli_orth)
bac <- Bac(ecoli)
arena <- Arena()
arena <- addOrg(arena, bac, amount=100)
arena <- addDefaultMed(arena, bac)
sim <- simEnv(arena, time=5)
plotGrowthCurve(sim)
getVarSubs(sim)
plotSpecActivity(sim)[2]
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