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jph00 / keras_raw-xception-149.ipynb
Created August 12, 2017 18:24
nbs/keras_raw-xception-149.ipynb
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jph00 / index.html
Last active October 18, 2017 19:55
<!DOCTYPE html>
<html>
<head><title>Brundage Bot Backfill</title></head>
<body>
<ul>
<li><a href="http://arxiv.org/abs/1710.00814">Detecting Adversarial Attacks on Neural Network Policies with Visual Foresight</a>: Deep reinforcement learning has shown promising results in learning control policies for complex sequential decision-making tasks. However, these neural network-based policies are known to be vulnerable to adversarial examples. This vulnerability poses a potentially serious threat to safety-critical systems such as autonomous vehicles. In this paper, we propose a defense mechanism to defend reinforcement learning agents from adversarial attacks by leveraging an action-conditioned frame prediction module. Our core idea is that the adversarial examples targeting at a neural network-based policy are not effective for the frame prediction model. By comparing the action distribution produced by a policy from processing the current observed frame to the action distribution produced by the same policy f
[convolutional] batch_normalize=1 filters=32 size=3 stride=1 pad=1 activation=leaky
# Downsample
[convolutional] batch_normalize=1 filters=64 size=3 stride=2 pad=1 activation=leaky
[convolutional] batch_normalize=1 filters=32 size=1 stride=1 pad=1 activation=leaky
[convolutional] batch_normalize=1 filters=64 size=3 stride=1 pad=1 activation=leaky
[shortcut] from=-3 activation=linear
# Downsample
[convolutional] batch_normalize=1 filters=128 size=3 stride=2 pad=1 activation=leaky

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sudo add-apt-repository -y ppa:apt-fast/stable
sudo add-apt-repository -y ppa:graphics-drivers/ppa
sudo apt-get update
sudo apt-get -y install apt-fast
# prompts
sudo apt-fast -y upgrade
sudo apt-fast install -y ubuntu-drivers-common libvorbis-dev libflac-dev libsndfile-dev cmake build-essential libgflags-dev libgoogle-glog-dev libgtest-dev google-mock zlib1g-dev libeigen3-dev libboost-all-dev libasound2-dev libogg-dev libtool libfftw3-dev libbz2-dev liblzma-dev libgoogle-glog0v5 gcc-6 gfortran-6 g++-6 doxygen graphviz libsox-fmt-all parallel exuberant-ctags vim-nox python-powerline python3-pip
sudo apt-fast install -y tigervnc-standalone-server firefox lsyncd mesa-common-dev ack
sudo add-apt-repository -y ppa:apt-fast/stable
sudo add-apt-repository -y ppa:graphics-drivers/ppa
sudo apt-get update
sudo apt-get -y install apt-fast
# prompts
sudo apt-fast -y upgrade
sudo apt-fast install -y ubuntu-drivers-common libvorbis-dev libflac-dev libsndfile-dev cmake build-essential libgflags-dev libgoogle-glog-dev libgtest-dev google-mock zlib1g-dev libeigen3-dev libboost-all-dev libasound2-dev libogg-dev libtool libfftw3-dev libbz2-dev liblzma-dev libgoogle-glog0v5 gcc-6 gfortran-6 g++-6 doxygen graphviz libsox-fmt-all parallel exuberant-ctags vim-nox python-powerline python3-pip
sudo apt-fast install -y tigervnc-standalone-server firefox lsyncd mesa-common-dev ack
@jph00
jph00 / keras_raw-vgg16.ipynb
Created August 13, 2017 14:42
nbs/keras_raw-vgg16.ipynb
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jph00 / keras_raw-xception-149.ipynb
Created August 13, 2017 01:58
nbs/keras_raw-xception-149.ipynb
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@jph00
jph00 / mit-letter.md
Last active September 8, 2019 15:17

Dear Joi Ito, Reid Hoffman, Eileen Donahoe, David Hornik, Jennifer Lerner, James Manyika, Martha Minow, Amanda Nguyen, Laurene Powell Jobs, Jamila Raqib, Maria Zuber, and other fellow Selection Committee members for the MIT Disobedience Awards:

I was stunned and dismayed by Joi's email disclosing his extensive involvement, personally and through MIT, with Jeffrey Epstein. It is even harder to understand how this relationship could have begun and burgeoned in 2013, years after Epstein pled guilty to sex charges involving minor children. And it boggles the mind that this involvement spanned Epstein-tainted donations to MIT as well as investments in Joi's personal funds.

I'm struggling to find a way to make sense of this situation that does not lead me to write the sentence "Respected tech and academic leader raised money from convicted pedophile and leveraged that institutional connection to personally profit from the relationship." I am not trying to be unkind, but I would need help to understand why this se

(from @philippbayer)

1. Gene function prediction - given a predicted protein or gene sequence, what is the function?

The classic approach is to use something like BLAST to compare with known sequences, but this has many drawbacks. For starters, in plants the databases lean very heavily towards Arabidopsis thaliana, not more common plants such as maize or wheat.

People do get around this by looking for protein domains (Hidden Markov Models) but that doesn't go very far either, you have to describe domains first, and many are very generic. Can we classify protein/gene sequence using RNN/CNNs? Here's an example where someone tried