This script is modeled after tee
(see [man tee
][2]).
It's like your normal copy and paste commands, but unified and able to sense when you want it to be chainable
BEGIN{ | |
# column separated by tabs or `; ` | |
FS="(\\t|; )"; | |
# write output separated by tabs | |
OFS="\t"; | |
} | |
{ | |
# only select genes | |
if (NR > 5 && $3 == "gene") { | |
# clean gene_id |
# this is the build file for a set of Perl scripts meant to be used as command line utilities, and not loaded as an explicit module | |
# this is modelled after HiCUP, a set of Perl scripts that also depend on R scripts and a local module | |
#!/bin/bash | |
set -eu -o pipefail | |
# We copy the tarball's contents (which also includes docs and config files) to $PREFIX/share. | |
# Then just the Perl scripts are symlinked to $PREFIX/bin. | |
# There are some additional fixes to the Perl scripts to make them run in the conda environment. | |
outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM |
%---Packages | |
\usepackage[backend=bibtex, citestyle=authoryear, bibstyle=authortitle, dashed=false, maxcitenames=1]{biblatex} | |
\usepackage[T1]{fontenc} | |
\usepackage[margin=2.5cm]{geometry} | |
\usepackage{tocloft} | |
\usepackage{setspace} | |
\usepackage{tabularx, threeparttable, etoolbox, sectsty, dsfont, subfiles} | |
\usepackage{flafter, wrapfig, subfig, float} | |
\usepackage{pdfpages} | |
\usepackage[compact,explicit]{titlesec} |