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(venv3) $ pip3 install transformers==3.0.0 | |
Collecting transformers==3.0.0 | |
Using cached transformers-3.0.0-py3-none-any.whl (754 kB) | |
Collecting numpy | |
Using cached numpy-1.26.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) | |
Collecting tokenizers==0.8.0-rc4 | |
Using cached tokenizers-0.8.0rc4.tar.gz (96 kB) | |
Installing build dependencies ... done | |
Getting requirements to build wheel ... done | |
Preparing metadata (pyproject.toml) ... done |
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$ cat systemd-resoloved-debug.log | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Received dns UDP packet of size 64, ifindex=0, ttl=64, fragsize=0 | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Got DNS stub UDP query packet for id 38089 | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Looking up RR for rubyspecdoesntexist.fallingsnow.net IN A. | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Cache miss for rubyspecdoesntexist.fallingsnow.net IN A | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Firing regular transaction 63253 for <rubyspecdoesntexist.fallingsnow.net IN A> scope dns on */* (validate=yes). | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Using feature level UDP+EDNS0 for transaction 63253. | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Using DNS server 147.75.207.207 for transaction 63253. | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Announcing packet size 1472 in egress EDNS(0) packet. | |
Oct 17 15:28:58 ruby1 systemd-resolved[3712]: Emitting UDP, link MTU is 1500, socket MTU is 1500, minimal MTU is 40 |
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$ cat card.rb | |
# Set your card number here. 16 digits. | |
card_no = '1234123412341234' | |
reverse_card_no = card_no.reverse | |
index = 1 | |
total = 0 | |
reverse_card_no.each_char do |c| | |
multi = (index % 2 == 1) ? 1 : 2 |
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$ cat home/script/stap/para-callgraph.stp | |
#! /usr/bin/env stap | |
function trace(entry_p, extra) { | |
%( $# > 1 %? if (tid() in trace) %) | |
printf("%s%s%s %s\n", | |
thread_indent (entry_p), | |
(entry_p>0?"->":"<-"), | |
ppfunc (), | |
extra) |
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$ cat ltrace_ttt.log | |
[pid 691834] 1680200962.002912 openssl.so->OPENSSL_init_ssl(0, 0, 0x7f2e32d09580, 0 <unfinished ...> | |
[pid 691834] 1680200962.003789 libssl.so.3->OPENSSL_init_crypto(76, 0, 0, 0) = 1 | |
[pid 691834] 1680200962.080976 libssl.so.3->CRYPTO_THREAD_run_once(0x7f2e20f18964, 0x7f2e20e822e9, 0x7f2e20ce8d08, 0x7601 <unfinished ...> | |
[pid 691834] 1680200962.081128 libssl.so.3->CRYPTO_THREAD_run_once(0x7f2e20f18958, 0x7f2e20e7c779, 0x7ffdf5534d90, 0x7601 <unfinished ...> | |
[pid 691834] 1680200962.081212 libssl.so.3->COMP_zlib(0x7ffdf5534ce8, 0x7f2e32d9a100, 0x7ffdf5534cd0, 0x7601) = 0x7f2e20ce5c80 | |
[pid 691834] 1680200962.081337 libssl.so.3->OPENSSL_sk_new(0x7f2e20e7c755, 0x7f2e32d9a100, 0x7ffdf5534cd0, 0x7601) = 0x1f148a0 | |
[pid 691834] 1680200962.081439 libssl.so.3->COMP_get_type(0x7f2e20ce5c80, 0, 0x7f2e20e7c755, 6) = 0 | |
[pid 691834] 1680200962.081550 <... CRYPTO_THREAD_run_once resumed> ) = 1 | |
[pid 691834] 1680200962.081592 libssl.so.3->OPENSSL_atexit(0x7f2e20e82365, 0x7f2e20f185e0, 8, 2) = 1 |
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$ cat result.err/build.log | |
Mock Version: 3.4 | |
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target x86_64 --nodeps /builddir/build/SPECS/bowtie.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f70ababb690>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.guk7ajsi:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/de |
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$ ls exampleFiles | |
.gitkeep MW539688.1.fasta NC_016067.1.fasta test.fa | |
ilDeiPorc1.reads.fa MW539688.1.gb NC_016067.1.gb | |
$ time docker run --rm -w /data/ -v /home/jaruga/tmp/mitohifi/exampleFiles/:/data/ -t docker.io/biocontainers/mitohifi:2.2_cv1 mitohifi.py -c /data/test.fa -f /data/NC_016067.1.fasta -g /data/NC_016067.1.gb -t 4 -o 2 | |
2022-10-25 20:00:44 [INFO] Welcome to MitoHifi v2. Starting pipeline... | |
2022-10-25 20:00:44 [INFO] Length of related mitogenome is: 15659 bp | |
2022-10-25 20:00:44 [INFO] Number of genes on related mitogenome: 37 | |
2022-10-25 20:00:44 [INFO] Running MitoHifi pipeline in contigs mode... | |
2022-10-25 20:00:44 [INFO] 1. Fixing potentially conflicting FASTA headers |
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$ wc -l ilDeiPorc1.reads.* | |
244682 ilDeiPorc1.reads.fa | |
20045 ilDeiPorc1.reads.small.fa | |
264727 total | |
$ time docker run --rm -w /data/ -v /home/jaruga/tmp/mitohifi/exampleFiles/:/data/ -t docker.io/biocontainers/mitohifi:2.2_cv1 mitohifi.py -r /data/ilDeiPorc1.reads.small.fa -f /data/MW539688.1.fasta -g /data/MW539688.1.gb -t 4 -o 2 /data/ -v /home/jaruga/tmp/mitohifi/exampleFiles/:/data/ -t docker.io/biocontainers/mitohifi:2.2_cv1 mitohifi.py -r /data/ilDeiPorc1.reads.small.fa -f /data/MW539688.1.fasta -g /dat2022-10-25 16:33:56 [INFO] Welcome to MitoHifi v2. Starting pipeline... | |
2022-10-25 16:33:56 [INFO] Length of related mitogenome is: 15354 bp | |
2022-10-25 16:33:56 [INFO] Number of genes on related mitogenome: 37 | |
2022-10-25 16:33:56 [INFO] Running MitoHifi pipeline in reads mode... | |
2022-10-25 16:33:56 [INFO] 1. First we map your Pacbio HiFi reads to the close-related mitogenome |
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$ pwd | |
/home/jaruga/tmp/mitohifi | |
$ ls -lh exampleFiles | |
total 39M | |
-rw-r--r--. 1 jaruga jaruga 1 Oct 11 17:17 .gitkeep | |
-rw-r--r--. 1 jaruga jaruga 15M Oct 11 17:17 ilDeiPorc1.reads.fa | |
-rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 MW539688.1.fasta | |
-rw-r--r--. 1 jaruga jaruga 33K Oct 11 17:17 MW539688.1.gb | |
-rw-r--r--. 1 jaruga jaruga 16K Oct 11 17:17 NC_016067.1.fasta |
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#!/bin/bash | |
set -eu | |
rpm -q redhat-rpm-config | |
var_names=" | |
_general_options | |
__global_compiler_flags | |
optflags |
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