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junaruga/dockstore_tool_launch_with_container_podman.log

Created September 6, 2022 16:29
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dockstore_tool_launch_with_container_podman.log
$ cat /etc/fedora-release
Fedora release 36 (Thirty Six)
$ which podman
/bin/podman
$ which docker
~/.local/bin/docker
$ ls -l ~/.local/bin/docker
lrwxrwxrwx. 1 jaruga jaruga 11 Sep 2 23:57 /home/jaruga/.local/bin/docker -> /bin/podman*
$ make run 2>&1 | tee make_run.log
$ cat make_run.log
dockstore tool launch \
--local-entry "bio-diversity-genomics-garg.wdl" \
--json "bio-diversity-genomics-garg.inputs.json"
WARNING: Docker is not running. If this tool uses Docker, it will fail.
Created temporary working directory at '/tmp/1662481519090-0'
Using local file 'bio-diversity-genomics-garg.wdl' as primary descriptor
Creating directories for run of Dockstore launcher in current working directory: /home/jaruga/git/GargGroup/BioDivGenomics
Provisioning your input files to your local machine
Downloading: BioDivGenomics.input_file from hifi_input.fastq to: /home/jaruga/git/GargGroup/BioDivGenomics/cromwell-input/6ead1b3a-d3e9-40e2-a66e-a960313c17c7/hifi_input.fastq
Calling out to Cromwell to run your workflow
Executing: java -jar /home/jaruga/.dockstore/libraries/cromwell-77.jar run --inputs /tmp/foo6508558916161670147json /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl
[2022-09-06 18:25:20,46] [info] Running with database db.url = jdbc:hsqldb:mem:fc9dee57-dea5-401c-aba2-1d26a95ac8e8;shutdown=false;hsqldb.tx=mvcc
Sep 06, 2022 6:25:20 PM liquibase.servicelocator
INFO: Cannot load service: liquibase.license.LicenseService: liquibase.license.pro.DaticalTrueLicenseService Unable to get public no-arg constructor
Sep 06, 2022 6:25:20 PM liquibase.database
INFO: Set default schema name to PUBLIC
Sep 06, 2022 6:25:20 PM liquibase.lockservice
INFO: Successfully acquired change log lock
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Creating database history table with name: PUBLIC.DATABASECHANGELOG
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Reading from PUBLIC.DATABASECHANGELOG
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table WORKFLOW_EXECUTION created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table EXECUTION created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table JES_JOB created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table LOCAL_JOB created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/db_schema.xml::db_schema_other_table_alldb::scottfrazer ran successfully in 11ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table SYMBOL created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/db_schema.xml::db_schema_symbol_table_otherdb::scottfrazer ran successfully in 3ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index STATUS_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to SYMBOL (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to JES_JOB (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to LOCAL_JOB (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/db_schema.xml::db_schema_constraints::scottfrazer ran successfully in 8ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from SYMBOL.ITERATION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/symbol_iteration_null.xml::symbol_iteration_null::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table WORKFLOW_EXECUTION_AUX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/wdl_and_inputs.xml::WORKFLOW_EXECUTION_AUX::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to WORKFLOW_EXECUTION_AUX (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_EXECUTION_AUX(WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/wdl_and_inputs.xml::WE_AUX_CONSTRAINTS::mcovarr ran successfully in 3ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column WORKFLOW_EXECUTION.WDL_URI dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column LOCAL_JOB.COMMAND dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/drop_workflow_uri_and_local_command.xml::drop_workflow_uri_and_local_command::kshakir ran successfully in 3ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from LOCAL_JOB.PID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from LOCAL_JOB.RC
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/local_job_allow_null.xml::local_job_allow_null::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to SYMBOL.ITERATION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/symbol_iteration_not_null.xml::symbol_iteration_not_null::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_EXECUTION(WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to SYMBOL(WORKFLOW_EXECUTION_ID, SCOPE, NAME, ITERATION, IO)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to LOCAL_JOB(EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to JES_JOB(EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/add_unique_constraints.xml::add_unique_constraints::kshakir ran successfully in 6ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: SYMBOL.WDL_VALUE datatype was changed to LONGVARCHAR
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/lengthen_wdl_value.xml::LENGTHEN_WDL_VALUE::sfrazer ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns INDEX(INT) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to EXECUTION.INDEX
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/add_index_in_execution.xml::add-index-in-execution::tjeandet ran successfully in 3ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column SYMBOL.ITERATION renamed to INDEX
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/rename_iteration_to_index.xml::rename-iteration-to-index::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table SGE_JOB created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/sge.xml::sge::scottfrazer ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to SGE_JOB (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/sge.xml::db_schema_constraints::scottfrazer ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key FK_EXECUTION_WORKFLOW_EXECUTION_ID dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint UK_EX_WORKFLOW_EXECUTION_ID dropped from EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, INDEX)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column EXECUTION.INDEX renamed to IDX
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/change_execution_unique_constraint.xml::change_execution_unique_constraint::tjeandet ran successfully in 6ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column LOCAL_JOB.RC dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns RC(INT) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/rc.xml::rc::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns WORKFLOW_OPTIONS(LONGVARCHAR) added to WORKFLOW_EXECUTION_AUX
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_options.xml::workflow-options::sfrazer ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: JES_JOB.JES_ID datatype was changed to VARCHAR(100)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: JES_JOB.JES_STATUS datatype was changed to VARCHAR(100)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/jes_id_update.xml::jes_id_update::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: SGE_JOB.SGE_JOB_NUMBER datatype was changed to INT
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/optional_sge_ids.xml::optional_sge_ids::chrisl ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns START_DT(datetime) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns END_DT(datetime) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/add_start_end_time_in_execution.xml::add-start-end-time-in-execution::jgentry ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column JES_JOB.JES_ID renamed to JES_RUN_ID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/rename_jes_id.xml::rename-jes-id-to-jes-run-id::sfrazer ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns WORKFLOW_NAME(VARCHAR(500)) added to WORKFLOW_EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/add_workflow_name.xml::workflow-name::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns REPORTABLE_RESULT(TINYINT) added to SYMBOL
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/top_level_output.xml::top_level_output::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_EXECUTION_ID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_EXECUTION_AUX.WDL_SOURCE
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_EXECUTION_AUX.JSON_INPUTS
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_EXECUTION_AUX.WORKFLOW_OPTIONS
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_execution_aux_not_null.xml::workflow_execution_aux_not_null::tjeandet ran successfully in 4ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns ALLOWS_RESULT_REUSE(BOOLEAN),DOCKER_IMAGE_HASH(VARCHAR(100)),RESULTS_CLONED_FROM(INT),EXECUTION_HASH(VARCHAR(100)) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index HASH_INDEX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns HASH(VARCHAR(100)) added to SYMBOL
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION (RESULTS_CLONED_FROM)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/call_result_caching.xml::call_result_caching::chrisl ran successfully in 7ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table EXECUTION_EVENT created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION_EVENT (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to EXECUTION_EVENT(EXECUTION_ID, DESCRIPTION)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/events_table.xml::execution_event_table::chrisl ran successfully in 4ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from JES_JOB.JES_RUN_ID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from JES_JOB.JES_STATUS
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from SGE_JOB.SGE_JOB_NUMBER
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/sync_not_null_constraints.xml::job_not_null_columns::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to EXECUTION_EVENT.END_DT
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/sync_not_null_constraints.xml::events_end_dt_not_null::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to SGE_JOB(EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/sge_job_execution_unique_key.xml::sge_job_execution_unique_key::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns ATTEMPT(INT) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to EXECUTION.ATTEMPT
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key FK_EXECUTION_WORKFLOW dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint UK_WORKFLOW_CALL_INDEX dropped from EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to EXECUTION(WORKFLOW_EXECUTION_ID, CALL_FQN, IDX, ATTEMPT)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/add_attempt_in_execution.xml::add-attempt-in-execution::tjeandet ran successfully in 7ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table EXECUTION_INFO created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::CREATE_EXECUTION_INFO::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to EXECUTION_INFO (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::add_foreign_key_constraints::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns BACKEND_TYPE(VARCHAR(255)) added to EXECUTION
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::add_backend_type_column::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::insert_data_from_backend_tables::mcovarr ran successfully in 6ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::set_backend_type::mcovarr ran successfully in 9ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table JES_JOB dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table SGE_JOB dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table LOCAL_JOB dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::drop_job_tables::mcovarr ran successfully in 4ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to EXECUTION_INFO(EXECUTION_ID, INFO_KEY)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::execution_info_uniqueness_constraint::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to EXECUTION.BACKEND_TYPE
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/execution_backend_info.xml::execution_backend_type_not_null::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table RUNTIME_ATTRIBUTES created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to RUNTIME_ATTRIBUTES (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to RUNTIME_ATTRIBUTES(EXECUTION_ID, ATTRIBUTE_NAME)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/runtime_attributes_table.xml::runtime-attributes-table::tjeandet ran successfully in 4ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table FAILURE_EVENT created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to FAILURE_EVENT (EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to FAILURE_EVENT (WORKFLOW_EXECUTION_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/failure_table.xml::failure_table::chrisl ran successfully in 5ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table METADATA_JOURNAL created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal.xml::metadata_journal::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index METADATA_WORKFLOW_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal.xml::metadata_workflow_index::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index METADATA_JOB_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal.xml::metadata_job_index::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index METADATA_JOB_AND_KEY_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal.xml::metadata_job_and_key_index::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Columns METADATA_VALUE_TYPE(VARCHAR(10)) added to METADATA_JOURNAL
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_typed_values.xml::metadata_typed_values::tjeandet ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: METADATA_JOURNAL.METADATA_JOURNAL_ID datatype was changed to BIGINT
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Auto-increment added to METADATA_JOURNAL.METADATA_JOURNAL_ID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_metadata_summary.xml::metadata_journal_id_int_to_big_int::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table WORKFLOW_METADATA_SUMMARY created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_summary::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_METADATA_SUMMARY(WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_uuid_idx::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index WORKFLOW_METADATA_NAME_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_name_idx::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index WORKFLOW_METADATA_STATUS_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_metadata_summary.xml::workflow_metadata_status_idx::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: METADATA_JOURNAL.METADATA_TIMESTAMP datatype was changed to DATETIME(6)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_subsecond_timestamp::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: NOT NULL constraint has been added to METADATA_JOURNAL.METADATA_TIMESTAMP
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/metadata_journal_subsecond_timestamp.xml::metadata_journal_timestamp_not_null::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table WORKFLOW_STORE created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store.xml::WORKFLOW_STORE::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_STORE(WORKFLOW_UUID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store.xml::workflow_store_uuid_index::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index WORKFLOW_STORE_STATE_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store.xml::workflow_store_state_index::chrisl ran successfully in 0ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table BACKEND_KV_STORE created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/backend_KV_Store.xml::BACKEND_KV_STORE::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to BACKEND_KV_STORE(WORKFLOW_EXECUTION_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT, STORE_KEY)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/backend_KV_Store.xml::backend_KV_store_job_key_constraint::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table JOB_STORE created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store.xml::JOB_STORE::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Index JOB_STORE_UUID_IDX created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store.xml::job_store_uuid_index::chrisl ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to JOB_STORE(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX, JOB_RETRY_ATTEMPT)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store.xml::job_store_jobkey_index::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table CALL_CACHING_RESULT_METAINFO created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_RESULT_METAINFO(WORKFLOW_UUID, CALL_FQN, JOB_SCATTER_INDEX)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_metainfo_uniqueness::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table CALL_CACHING_HASH created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_hashes::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_HASH(HASH_KEY, RESULT_METAINFO_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_HASH (RESULT_METAINFO_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_hashes_uniqueness_foreign_key::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table CALL_CACHING_RESULT_SIMPLETON created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_RESULT_SIMPLETON(SIMPLETON_KEY, RESULT_METAINFO_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_uniqueness::chrisl ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_RESULT_SIMPLETON (RESULT_METAINFO_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/callcaching.xml::call_caching_result_simpletons_foreign_key::chrisl ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE datatype was changed to BOOLEAN
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_fix_boolean::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Default value added to CALL_CACHING_RESULT_METAINFO.ALLOW_RESULT_REUSE
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_allow_result_reuse_fix.xml::call_caching_reuse_default::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table JOB_STORE_RESULT_SIMPLETON created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons::mcovarr ran successfully in 3ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to JOB_STORE_RESULT_SIMPLETON(SIMPLETON_KEY, JOB_STORE_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_uniqueness::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Foreign key constraint added to JOB_STORE_RESULT_SIMPLETON (JOB_STORE_ID)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_simpletons.xml::job_store_result_simpletons_foreign_key::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column JOB_STORE.JOB_OUTPUT dropped
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_simpletons.xml::job_store_remove_job_output::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_STORE_MIGRATION::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_MIGRATION::mcovarr ran successfully in 5ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Null constraint dropped from JOB_STORE_RESULT_SIMPLETON.SIMPLETON_VALUE
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_VALUE_NULLABLE::mcovarr ran successfully in 8ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: WORKFLOW_EXECUTION + EXECUTION + SYMBOL + JOB_STORE -> JOB_STORE_RESULT_SIMPLETON migration complete.
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::JOB_STORE_RESULT_SIMPLETON_MIGRATION::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::BACKEND_KV_STORE_MIGRATION::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Workflow option renaming migration complete.
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/restart_and_recover_migration.xml::WORKFLOW_OPTIONS_RENAME_MIGRATION::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Table SUMMARY_STATUS created
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/summary_status_table.xml::summary_status_table::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Unique constraint added to SUMMARY_STATUS(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/summary_status_table.xml::summary_status_summarized_table_name_index::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column CALL_CACHING_RESULT_METAINFO.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column WORKFLOW_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column JOB_STORE.WORKFLOW_UUID renamed to WORKFLOW_EXECUTION_UUID
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/standardize_column_names.xml::workflow_execution_uuid::rmunshi ran successfully in 2ms
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column METADATA_JOURNAL.METADATA_CALL_FQN renamed to CALL_FQN
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column METADATA_JOURNAL.METADATA_CALL_INDEX renamed to JOB_SCATTER_INDEX
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: Column METADATA_JOURNAL.METADATA_CALL_ATTEMPT renamed to JOB_RETRY_ATTEMPT
Sep 06, 2022 6:25:21 PM liquibase.changelog
INFO: ChangeSet changesets/standardize_column_names.xml::call_job_identifiers::rmunshi ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/embiggen_metadata_value.xml::entry_or_journal_existence_xor::mcovarr ran successfully in 9ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Marking ChangeSet: changesets/embiggen_metadata_value.xml::embiggen_metadata_entry::mcovarr ran despite precondition failure due to onFail='MARK_RAN':
changelog.xml : Table PUBLIC.METADATA_ENTRY does not exist
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: METADATA_JOURNAL.METADATA_VALUE datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/embiggen_metadata_value.xml::embiggen_metadata_journal::mcovarr ran successfully in 3ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_JOB_DETRITUS created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus::rmunshi ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_JOB_DETRITUS(JOB_DETRITUS_KEY, RESULT_METAINFO_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_key_uniqueness::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_JOB_DETRITUS (RESULT_METAINFO_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_job_detritus.xml::call_caching_job_detritus_foreign_key::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: JOB_STORE.JOB_SUCCESSFUL datatype was changed to BOOLEAN
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_successful::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: JOB_STORE.RETRYABLE_FAILURE datatype was changed to BOOLEAN
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_tinyints.xml::job_store_fix_job_retryable_failure::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: NOT NULL constraint has been added to JOB_STORE.JOB_SUCCESSFUL
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/job_store_tinyints.xml::job_store_not_nullable_job_successful::mcovarr ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index JOB_STORE_UUID_IDX dropped from table JOB_STORE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index WORKFLOW_METADATA_NAME_IDX dropped from table WORKFLOW_METADATA_SUMMARY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index WORKFLOW_METADATA_STATUS_IDX dropped from table WORKFLOW_METADATA_SUMMARY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index WORKFLOW_STORE_STATE_IDX dropped from table WORKFLOW_STORE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_CALL_CACHING_JOB_DETRITUS_KEY dropped from CALL_CACHING_JOB_DETRITUS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_CALL_CACHING_RESULT_METAINFO dropped from CALL_CACHING_RESULT_METAINFO
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_CALL_CACHING_HASH dropped from CALL_CACHING_HASH
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_CALL_CACHING_RESULT_SIMPLETON dropped from CALL_CACHING_RESULT_SIMPLETON
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint JOB_STORE_JOBKEY_IDX dropped from JOB_STORE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_BACKEND_KV_STORE_KEY dropped from BACKEND_KV_STORE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UK_JOB_STORE_RESULT_SIMPLETON dropped from JOB_STORE_RESULT_SIMPLETON
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint SUMMARY_STATUS_SUMMARY_TABLE_NAME_SUMMARIZED_TABLE_NAME_INDEX dropped from SUMMARY_STATUS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint WORKFLOW_METADATA_UUID_IDX dropped from WORKFLOW_METADATA_SUMMARY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint WORKFLOW_STORE_UUID_IDX dropped from WORKFLOW_STORE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key CCJD_RESULT_METAINFO_ID_FK dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key CCH_RESULT_METAINFO_ID_FK dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key CCRS_RESULT_METAINFO_ID_FK dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key JSRS_JOB_STORE_FK dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_JOB_DETRITUS renamed to CALL_CACHING_DETRITUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_RESULT_METAINFO renamed to CALL_CACHING_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_HASH renamed to CALL_CACHING_HASH_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_RESULT_SIMPLETON renamed to CALL_CACHING_SIMPLETON_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table BACKEND_KV_STORE renamed to JOB_KEY_VALUE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table JOB_STORE renamed to JOB_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table JOB_STORE_RESULT_SIMPLETON renamed to JOB_STORE_SIMPLETON_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table METADATA_JOURNAL renamed to METADATA_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SUMMARY_STATUS renamed to SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_METADATA_SUMMARY renamed to WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_STORE renamed to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_JOB_DETRITUS_ID renamed to CALL_CACHING_DETRITUS_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_KEY renamed to DETRITUS_KEY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_DETRITUS_ENTRY.JOB_DETRITUS_VALUE renamed to DETRITUS_VALUE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_DETRITUS_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_ENTRY.CALL_CACHING_RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_HASH_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ID renamed to CALL_CACHING_HASH_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_SIMPLETON_ENTRY.RESULT_METAINFO_ID renamed to CALL_CACHING_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_RESULT_SIMPLETON_ID renamed to CALL_CACHING_SIMPLETON_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_KEY_VALUE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_KEY_VALUE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_KEY_VALUE_ENTRY.BACKEND_KV_STORE_ID renamed to JOB_KEY_VALUE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_KEY_VALUE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_ENTRY.JOB_RETRY_ATTEMPT renamed to JOB_ATTEMPT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_ENTRY.JOB_SCATTER_INDEX renamed to JOB_INDEX
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_ENTRY.CALL_FQN renamed to CALL_FULLY_QUALIFIED_NAME
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_ID renamed to JOB_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_RESULT_SIMPLETON_ID renamed to JOB_STORE_SIMPLETON_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ID renamed to SUMMARY_STATUS_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column WORKFLOW_METADATA_SUMMARY_ENTRY.END_DT renamed to END_TIMESTAMP
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column WORKFLOW_METADATA_SUMMARY_ENTRY.START_DT renamed to START_TIMESTAMP
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ID renamed to WORKFLOW_METADATA_SUMMARY_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ID renamed to WORKFLOW_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from CALL_CACHING_DETRITUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from CALL_CACHING_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from CALL_CACHING_HASH_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from CALL_CACHING_SIMPLETON_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from JOB_KEY_VALUE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from JOB_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from JOB_STORE_SIMPLETON_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key dropped from WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_DETRITUS_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to CALL_CACHING_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_HASH_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_SIMPLETON_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to JOB_KEY_VALUE_ENTRY (JOB_KEY_VALUE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to JOB_STORE_ENTRY (JOB_STORE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_SIMPLETON_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to SUMMARY_STATUS_ENTRY (SUMMARY_STATUS_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to WORKFLOW_METADATA_SUMMARY_ENTRY (WORKFLOW_METADATA_SUMMARY_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to WORKFLOW_STORE_ENTRY (WORKFLOW_STORE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to CALL_CACHING_DETRITUS_ENTRY.CALL_CACHING_DETRITUS_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to CALL_CACHING_ENTRY.CALL_CACHING_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to CALL_CACHING_SIMPLETON_ENTRY.CALL_CACHING_SIMPLETON_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to JOB_KEY_VALUE_ENTRY.JOB_KEY_VALUE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to JOB_STORE_ENTRY.JOB_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_SIMPLETON_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to SUMMARY_STATUS_ENTRY.SUMMARY_STATUS_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to WORKFLOW_METADATA_SUMMARY_ENTRY.WORKFLOW_METADATA_SUMMARY_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to WORKFLOW_STORE_ENTRY.WORKFLOW_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_DETRITUS_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_SIMPLETON_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_DETRITUS_ENTRY(CALL_CACHING_ENTRY_ID, DETRITUS_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_SIMPLETON_ENTRY(CALL_CACHING_ENTRY_ID, SIMPLETON_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to JOB_KEY_VALUE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT, STORE_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to JOB_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX, JOB_ATTEMPT)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to JOB_STORE_SIMPLETON_ENTRY(JOB_STORE_ENTRY_ID, SIMPLETON_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_STORE_ENTRY(WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_JOB_STORE_ENTRY_WEU created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_STORE_ENTRY_WS created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/standardize_column_names_again.xml::standardize_column_names_again::kshakir ran successfully in 65ms
[2022-09-06 18:25:22,09] [info] Running migration RenameWorkflowOptionsInMetadata with a read batch size of 100000 and a write batch size of 100000
[2022-09-06 18:25:22,10] [info] [RenameWorkflowOptionsInMetadata] 100%
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: RenameWorkflowOptionsInMetadata complete.
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/rename_workflow_options_in_metadata.xml::rename_workflow_options_in_metadata::tjeandet ran successfully in 11ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: EncryptWorkflowStoreEntryWorkflowOptions complete.
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::encrypt_workflow_store_entry_workflow_options::kshakir ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ClearMetadataEntryWorkflowOptions complete.
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/encrypt_and_clear_workflow_options.xml::clear_metadata_entry_workflow_options::kshakir ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SUB_WORKFLOW_STORE_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/sub_workflow_store.xml::SUB_WORKFLOW_STORE_ENTRY::tjeandet ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_SUB_WORKFLOW_STORE_ENTRY_PWEU created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_uuid_index::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to SUB_WORKFLOW_STORE_ENTRY(PARENT_WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, CALL_INDEX, CALL_ATTEMPT)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_jobkey_index::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/sub_workflow_store.xml::sub_workflow_store_root_workflow_fk::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns IMPORTS_ZIP(BLOB) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_imports_file.xml::workflow-store-imports-file::cjllanwarne ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns CUSTOM_LABELS(LONGVARCHAR) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_labels_file.xml::workflow-store-labels-file::cjllanwarne ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE datatype was changed to LONGVARCHAR
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/embiggen_detritus_value.xml::embiggen_call_caching_detritus_entry::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key FK_CALL_CACHING_HASH_ENTRY_CALL_CACHING_ENTRY_ID dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key FK_JOB_STORE_RESULT_SIMPLETON_JOB_STORE_ENTRY_ID dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key FK_SUB_WORKFLOW_STORE_ROOT_WORKFLOW_ID_WORKFLOW_STORE_ENTRY_ID dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_CALL_CACHING_ENTRY_WEU_CQFN_JI dropped from CALL_CACHING_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_CALL_CACHING_HASH_ENTRY_CCEI dropped from CALL_CACHING_HASH_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_ENTRY(WORKFLOW_EXECUTION_UUID, CALL_FULLY_QUALIFIED_NAME, JOB_INDEX)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CALL_CACHING_HASH_ENTRY(CALL_CACHING_ENTRY_ID, HASH_KEY)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_HASH_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to SUB_WORKFLOW_STORE_ENTRY (ROOT_WORKFLOW_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/standardize_column_names_patches.xml::standardize_column_names_patches::kshakir ran successfully in 11ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CALL_CACHING_SIMPLETON_ENTRY.SIMPLETON_VALUE datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: JOB_STORE_ENTRY.EXCEPTION_MESSAGE datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: JOB_STORE_SIMPLETON_ENTRY.SIMPLETON_VALUE datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.CUSTOM_LABELS datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.WORKFLOW_DEFINITION datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.WORKFLOW_INPUTS datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.WORKFLOW_OPTIONS datatype was changed to LONGTEXT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/standardize_column_names_patches.xml::hsqldb_longvarchar_to_longtext::kshakir ran successfully in 8ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from CALL_CACHING_DETRITUS_ENTRY.DETRITUS_VALUE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from CALL_CACHING_SIMPLETON_ENTRY.SIMPLETON_VALUE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from JOB_STORE_SIMPLETON_ENTRY.SIMPLETON_VALUE
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_DEFINITION
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_INPUTS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from WORKFLOW_STORE_ENTRY.WORKFLOW_OPTIONS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Null constraint dropped from WORKFLOW_STORE_ENTRY.CUSTOM_LABELS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/nullable_lobs.xml::nullable_lobs::kshakir ran successfully in 4ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns JOB_ATTEMPT(INT) added to CALL_CACHING_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/add_attempt_in_call_caching_entry.xml::add_attempt_in_call_caching_entry::tjeandet ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_STORE_ENTRY.CUSTOM_LABELS
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/replace_empty_custom_labels.xml::custom_labels_not_null::rmunshi ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CALL_CACHING_AGGREGATION_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CALL_CACHING_AGGREGATION_ENTRY (CALL_CACHING_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_CALL_CACHING_AGGREGATION_ENTRY_BA_IFA created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/call_caching_aggregated_hashes.xml::call_caching_aggregation_entry_keys_and_indexes::tjeandet ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CUSTOM_LABEL_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/custom_label_entry.xml::custom_LABEL_entry::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/custom_label_entry.xml::WMSE_workflow_execution_uuid_foreign_key::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/custom_label_entry.xml::custom_label_entry_index::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(63)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(63)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/custom_label_entry.xml::modify label key/value data types::rmunshi ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table DOCKER_HASH_STORE_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/docker_hash_store.xml::DOCKER_HASH_STORE_ENTRY::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to DOCKER_HASH_STORE_ENTRY(WORKFLOW_EXECUTION_UUID, DOCKER_TAG)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/docker_hash_store.xml::docker_hash_store_uuid_unique_constraint::tjeandet ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns WORKFLOW_TYPE(VARCHAR(30)),WORKFLOW_TYPE_VERSION(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_type_and_version.xml::workflow-store-type-and-version::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table EXECUTION_INFO dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table EXECUTION_EVENT dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table FAILURE_EVENT dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table RUNTIME_ATTRIBUTES dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SYMBOL dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table EXECUTION dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_EXECUTION_AUX dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_EXECUTION dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/remove_pre_pbe_tables.xml::drop-pre-pbe-tables::mcovarr ran successfully in 5ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key FK_CUSTOM_LABEL_ENTRY_WORKFLOW_EXECUTION_UUID dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_SUMMARY_STATUS_ENTRY_STN_STN dropped from SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_WORKFLOW_METADATA_SUMMARY_ENTRY_WEU dropped from WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CUSTOM_LABEL_ENTRY dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table METADATA_ENTRY dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SUMMARY_STATUS_ENTRY dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_METADATA_SUMMARY_ENTRY dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 4ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.WORKFLOW_STATE datatype was changed to varchar(20)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_state_widening.xml::workflow-store-state-widening::tjeandet ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns RESTARTED(BOOLEAN) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_restarted_column.xml::workflow-store-restarted-column::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_restarted_column.xml::update-restartable::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns WORKFLOW_ROOT(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_workflow_root_column.xml::workflow-store-workflow-root-column::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column WORKFLOW_STORE_ENTRY.RESTARTED dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns CROMWELL_ID(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns HEARTBEAT_TIMESTAMP(TIMESTAMP) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/workflow_store_horizontal_db.xml::workflow-store-horizontal-db::mcovarr ran successfully in 3ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns WORKFLOW_URL(VARCHAR(255)) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/add_workflow_url_in_workflow_store_entry.xml::add_workflow_url_in_workflow_store_entry::sshah ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.WORKFLOW_URL datatype was changed to VARCHAR(2000)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/change_max_size_workflow_url.xml::change_max_size_for_workflow_url::sshah ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns DOCKER_SIZE(BIGINT) added to DOCKER_HASH_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/docker_hash_store_add_size_column.xml::docker_hash_store_entry_add_size_column::tjeandet ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to CALL_CACHING_HASH_ENTRY.CALL_CACHING_HASH_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_call_caching_hash_entry_id.xml::restore_auto_increment_call_caching_hash_entry_id::mcovarr ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns HOG_GROUP(VARCHAR(100)) added to WORKFLOW_STORE_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/add_hog_group_in_workflow_store.xml::add_hog_group_in_workflow_store::cjllanwarne ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.HEARTBEAT_TIMESTAMP datatype was changed to DATETIME(6)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: WORKFLOW_STORE_ENTRY.SUBMISSION_TIME datatype was changed to DATETIME(6)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: NOT NULL constraint has been added to WORKFLOW_STORE_ENTRY.SUBMISSION_TIME
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/resync_engine_schema.xml::resync-engine-schema::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key FK_JOB_STORE_SIMPLETON_ENTRY_JOB_STORE_ENTRY_ID dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_job_store_ids.xml::drop_job_store_simpleton_entry_fk::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to JOB_STORE_ENTRY.JOB_STORE_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_job_store_ids.xml::enlarge_job_store_entry_id::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Auto-increment added to JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_SIMPLETON_ENTRY_ID
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_job_store_ids.xml::enlarge_job_store_simpleton_entry_id::mcovarr ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: JOB_STORE_SIMPLETON_ENTRY.JOB_STORE_ENTRY_ID datatype was changed to BIGINT
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_job_store_ids.xml::enlarge_job_store_simpleton_entry_fk::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to JOB_STORE_SIMPLETON_ENTRY (JOB_STORE_ENTRY_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/enlarge_job_store_ids.xml::recreate_job_store_simpleton_entry_fk::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.lockservice
INFO: Successfully released change log lock
[2022-09-06 18:25:22,26] [info] Running with database db.url = jdbc:hsqldb:mem:88868380-495f-4ab8-8803-fc2faeb83e20;shutdown=false;hsqldb.tx=mvcc
Sep 06, 2022 6:25:22 PM liquibase.database
INFO: Set default schema name to PUBLIC
Sep 06, 2022 6:25:22 PM liquibase.lockservice
INFO: Successfully acquired change log lock
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Creating database history table with name: PUBLIC.SQLMETADATADATABASECHANGELOG
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Reading from PUBLIC.SQLMETADATADATABASECHANGELOG
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table CUSTOM_LABEL_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table METADATA_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SUMMARY_STATUS_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table WORKFLOW_METADATA_SUMMARY_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, CUSTOM_LABEL_VALUE, WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_TABLE_NAME, SUMMARIZED_TABLE_NAME)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to WORKFLOW_METADATA_SUMMARY_ENTRY(WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Foreign key constraint added to CUSTOM_LABEL_ENTRY (WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WN created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_WS created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index METADATA_JOB_AND_KEY_IDX created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index METADATA_JOB_IDX created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index METADATA_WORKFLOW_IDX created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index SYS_IDX_11226 created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/move_sql_metadata_changelog.xml::move_metadata_changelog::kshakir ran successfully in 16ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_KEY datatype was changed to VARCHAR(255)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: CUSTOM_LABEL_ENTRY.CUSTOM_LABEL_VALUE datatype was changed to VARCHAR(255)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet changesets/change_max_size_label_entry.xml::change_max_size_for_key_and_value_in_label::sshah ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data deleted from CUSTOM_LABEL_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_CUSTOM_LABEL_ENTRY_CLK_CLV_WEU dropped from CUSTOM_LABEL_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to CUSTOM_LABEL_ENTRY(CUSTOM_LABEL_KEY, WORKFLOW_EXECUTION_UUID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/delete_duplicate_custom_labels.xml::delete_duplicate_custom_labels::kshakir ran successfully in 4ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns SUBMISSION_TIMESTAMP(DATETIME(6)) added to WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/add_submission_timestamp_metadata_summary.xml::add_submission_timestamp_in_metadata_entry::sshah ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_CUSTOM_LABEL_ENTRY_CLK_CLV created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/custom_label_entry_key_value_index.xml::custom_label_entry_key_value_index::mcovarr ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns PARENT_WORKFLOW_EXECUTION_UUID(VARCHAR(100)),ROOT_WORKFLOW_EXECUTION_UUID(VARCHAR(100)) added to WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_PWEU created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_RWEU created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint UC_SUMMARY_STATUS_ENTRY_STN_STN dropped from SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column SUMMARY_STATUS_ENTRY.SUMMARY_TABLE_NAME renamed to SUMMARY_NAME
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column SUMMARY_STATUS_ENTRY.SUMMARIZED_TABLE_NAME dropped
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Column SUMMARY_STATUS_ENTRY.MAXIMUM_ID renamed to SUMMARY_POSITION
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Unique constraint added to SUMMARY_STATUS_ENTRY(SUMMARY_NAME)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/add_parent_and_root_workflow_execution_uuid.xml::add_parent_and_root_workflow_execution_uuid::kshakir ran successfully in 8ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data deleted from SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in SUMMARY_STATUS_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/add_parent_and_root_workflow_typo_fix.xml::add_parent_and_root_workflow_typo_fix::kshakir ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index METADATA_JOB_AND_KEY_IDX dropped from table METADATA_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index METADATA_JOB_IDX dropped from table METADATA_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/metadata_index_removals.xml::metadata_index_removals::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Columns METADATA_ARCHIVE_STATUS(VARCHAR(30)) added to WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/add_metadata_archive_status.xml::add_metadata_archive_status::cjllanwarne ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_MAS created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/add_metadata_archive_status.xml::metadata_archive_status_index::cjllanwarne ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Table SUMMARY_QUEUE_ENTRY created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/summarization_queue_table.xml::summary_queue_table::gsterin ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/summarization_queue_table.xml::summary_queue_initialization::gsterin ran successfully in 3ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Primary key added to SUMMARY_QUEUE_ENTRY (METADATA_JOURNAL_ID)
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/summarization_queue_table_add_primary_key.xml::summary_queue_add_primary_key::gsterin ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Custom SQL executed
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/remove_non_summarizable_metadata_from_queue.xml::delete_non_summarizable_metadata_from_queue::mcovarr ran successfully in 2ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_MAS dropped from table WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Index IX_WORKFLOW_METADATA_SUMMARY_ENTRY_MAS_ET created
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/update_metadata_archive_index.xml::update_old_metadata_archive_status_index::cjllanwarne ran successfully in 1ms
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: Data updated in WORKFLOW_METADATA_SUMMARY_ENTRY
Sep 06, 2022 6:25:22 PM liquibase.changelog
INFO: ChangeSet metadata_changesets/reset_archive_statuses_to_null.xml::reset_archive_statuses_to_null::cjllanwarne ran successfully in 0ms
Sep 06, 2022 6:25:22 PM liquibase.lockservice
INFO: Successfully released change log lock
[2022-09-06 18:25:22,59] [info] Slf4jLogger started
[2022-09-06 18:25:22,70] [info] Workflow heartbeat configuration:
{
"cromwellId" : "cromid-c9105ea",
"heartbeatInterval" : "2 minutes",
"ttl" : "10 minutes",
"failureShutdownDuration" : "5 minutes",
"writeBatchSize" : 10000,
"writeThreshold" : 10000
}
[2022-09-06 18:25:22,72] [info] Metadata summary refreshing every 1 second.
[2022-09-06 18:25:22,72] [info] No metadata archiver defined in config
[2022-09-06 18:25:22,72] [info] No metadata deleter defined in config
[2022-09-06 18:25:22,73] [info] WriteMetadataActor configured to flush with batch size 200 and process rate 5 seconds.
[2022-09-06 18:25:22,73] [info] KvWriteActor configured to flush with batch size 200 and process rate 5 seconds.
[2022-09-06 18:25:22,75] [info] CallCacheWriteActor configured to flush with batch size 100 and process rate 3 seconds.
[2022-09-06 18:25:22,79] [info] JobRestartCheckTokenDispenser - Distribution rate: 50 per 1 seconds.
[2022-09-06 18:25:22,81] [info] JobExecutionTokenDispenser - Distribution rate: 20 per 10 seconds.
[2022-09-06 18:25:22,83] [info] SingleWorkflowRunnerActor: Version 77
[2022-09-06 18:25:22,84] [info] SingleWorkflowRunnerActor: Submitting workflow
[2022-09-06 18:25:22,86] [info] 1 new workflows fetched by cromid-c9105ea: 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e
[2022-09-06 18:25:22,89] [info] WorkflowManagerActor: Starting workflow 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e
[2022-09-06 18:25:22,89] [info] Unspecified type (Unspecified version) workflow 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e submitted
[2022-09-06 18:25:22,89] [info] WorkflowManagerActor: Successfully started WorkflowActor-4dd5472b-2cc4-41d8-8bbe-9beb28f3668e
[2022-09-06 18:25:22,90] [info] Retrieved 1 workflows from the WorkflowStoreActor
[2022-09-06 18:25:22,90] [info] SingleWorkflowRunnerActor: Workflow submitted 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e
[2022-09-06 18:25:22,91] [info] WorkflowStoreHeartbeatWriteActor configured to flush with batch size 10000 and process rate 2 minutes.
[2022-09-06 18:25:22,96] [info] MaterializeWorkflowDescriptorActor [4dd5472b]: Parsing workflow as WDL 1.0
[2022-09-06 18:25:23,33] [info] MaterializeWorkflowDescriptorActor [4dd5472b]: Call-to-Backend assignments: BioDivGenomics.FastK -> Local
[2022-09-06 18:25:25,56] [info] WorkflowExecutionActor-4dd5472b-2cc4-41d8-8bbe-9beb28f3668e [4dd5472b]: Starting BioDivGenomics.FastK
[2022-09-06 18:25:27,81] [info] Not triggering log of restart checking token queue status. Effective log interval = None
[2022-09-06 18:25:27,83] [info] Not triggering log of execution token queue status. Effective log interval = None
[2022-09-06 18:25:32,84] [info] Assigned new job execution tokens to the following groups: 4dd5472b: 1
[2022-09-06 18:25:33,97] [warn] Localization via hard link has failed: /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/inputs/1619461247/hifi_input.fastq -> /home/jaruga/git/GargGroup/BioDivGenomics/cromwell-input/6ead1b3a-d3e9-40e2-a66e-a960313c17c7/hifi_input.fastq: Invalid cross-device link
[2022-09-06 18:25:33,98] [info] BackgroundConfigAsyncJobExecutionActor [4dd5472bBioDivGenomics.FastK:NA:1]: echo "Running FastK.."
# echo "soruce: /cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/inputs/1619461247/hifi_input.fastq"
# FastK -v -t -p "/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/inputs/1619461247/hifi_input.fastq"
cat /etc/os-release
[2022-09-06 18:25:34,01] [info] BackgroundConfigAsyncJobExecutionActor [4dd5472bBioDivGenomics.FastK:NA:1]: executing: # make sure there is no preexisting Docker CID file
rm -f /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/docker_cid
# run as in the original configuration without --rm flag (will remove later)
docker run \
--cidfile /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/docker_cid \
-i \
\
--entrypoint /bin/bash \
-v /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK:/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK:delegated \
quay.io/junaruga/garg-fastk@sha256:793c909c66314ce6b5a75a6f0275f3eea212c10cf9aea0cba313a49e0ed92574 /cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/script
# get the return code (working even if the container was detached)
rc=$(docker wait cat /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/docker_cid)
# remove the container after waiting
docker rm cat /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/docker_cid
# return exit code
exit $rc
[2022-09-06 18:25:37,76] [info] BackgroundConfigAsyncJobExecutionActor [4dd5472bBioDivGenomics.FastK:NA:1]: job id: 195961
[2022-09-06 18:25:37,76] [info] BackgroundConfigAsyncJobExecutionActor [4dd5472bBioDivGenomics.FastK:NA:1]: Status change from - to Done
[2022-09-06 18:25:37,83] [info] WorkflowManagerActor: Workflow 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e failed (during ExecutingWorkflowState): Job BioDivGenomics.FastK:NA:1 exited with return code -1 which has not been declared as a valid return code. See 'continueOnReturnCode' runtime attribute for more details.
Check the content of stderr for potential additional information: /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/stderr.
Could not retrieve content: Could not read from /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/stderr: /tmp/1662481519090-0/cromwell-executions/BioDivGenomics/4dd5472b-2cc4-41d8-8bbe-9beb28f3668e/call-FastK/execution/stderr
[2022-09-06 18:25:42,78] [info] WorkflowManagerActor: Workflow actor for 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e completed with status 'Failed'. The workflow will be removed from the workflow store.
[2022-09-06 18:25:49,57] [info] SingleWorkflowRunnerActor workflow finished with status 'Failed'.
[2022-09-06 18:25:52,75] [info] Workflow polling stopped
[2022-09-06 18:25:52,75] [info] 0 workflows released by cromid-c9105ea
[2022-09-06 18:25:52,76] [info] Shutting down WorkflowStoreActor - Timeout = 5 seconds
[2022-09-06 18:25:52,76] [info] Shutting down WorkflowLogCopyRouter - Timeout = 5 seconds
[2022-09-06 18:25:52,76] [info] Aborting all running workflows.
[2022-09-06 18:25:52,76] [info] Shutting down JobExecutionTokenDispenser - Timeout = 5 seconds
[2022-09-06 18:25:52,76] [info] JobExecutionTokenDispenser stopped
[2022-09-06 18:25:52,76] [info] WorkflowStoreActor stopped
[2022-09-06 18:25:52,76] [info] WorkflowLogCopyRouter stopped
[2022-09-06 18:25:52,76] [info] Shutting down WorkflowManagerActor - Timeout = 3600 seconds
[2022-09-06 18:25:52,76] [info] WorkflowManagerActor: All workflows finished
[2022-09-06 18:25:52,76] [info] WorkflowManagerActor stopped
[2022-09-06 18:25:52,85] [info] Connection pools shut down
[2022-09-06 18:25:52,85] [info] Shutting down SubWorkflowStoreActor - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] Shutting down JobStoreActor - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] Shutting down CallCacheWriteActor - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] Shutting down ServiceRegistryActor - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] SubWorkflowStoreActor stopped
[2022-09-06 18:25:52,85] [info] Shutting down DockerHashActor - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] Shutting down IoProxy - Timeout = 1800 seconds
[2022-09-06 18:25:52,85] [info] CallCacheWriteActor Shutting down: 0 queued messages to process
[2022-09-06 18:25:52,85] [info] JobStoreActor stopped
[2022-09-06 18:25:52,85] [info] CallCacheWriteActor stopped
[2022-09-06 18:25:52,85] [info] KvWriteActor Shutting down: 0 queued messages to process
[2022-09-06 18:25:52,85] [info] WriteMetadataActor Shutting down: 0 queued messages to process
[2022-09-06 18:25:52,85] [info] IoProxy stopped
[2022-09-06 18:25:52,85] [info] DockerHashActor stopped
[2022-09-06 18:25:52,85] [info] ServiceRegistryActor stopped
[2022-09-06 18:25:52,86] [info] Shutting down connection pool: curAllocated=1 idleQueues.size=1 waitQueue.size=0 maxWaitQueueLimit=256 closed=false
[2022-09-06 18:25:52,86] [info] Shutting down connection pool: curAllocated=0 idleQueues.size=0 waitQueue.size=0 maxWaitQueueLimit=256 closed=false
[2022-09-06 18:25:52,86] [info] Shutting down connection pool: curAllocated=0 idleQueues.size=0 waitQueue.size=0 maxWaitQueueLimit=256 closed=false
[2022-09-06 18:25:52,86] [info] Shutting down connection pool: curAllocated=0 idleQueues.size=0 waitQueue.size=0 maxWaitQueueLimit=256 closed=false
[2022-09-06 18:25:52,86] [info] Database closed
[2022-09-06 18:25:52,86] [info] Stream materializer shut down
[2022-09-06 18:25:52,86] [info] WDL HTTP import resolver closed
Workflow 4dd5472b-2cc4-41d8-8bbe-9beb28f3668e transitioned to state Failed
18:25:53.276 [main] ERROR io.dockstore.common.Utilities - problems running command: java -jar /home/jaruga/.dockstore/libraries/cromwell-77.jar run --inputs /tmp/foo6508558916161670147json /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl
org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1)
at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404)
at org.apache.commons.exec.DefaultExecutor.access$200(DefaultExecutor.java:48)
at org.apache.commons.exec.DefaultExecutor$1.run(DefaultExecutor.java:200)
at java.base/java.lang.Thread.run(Thread.java:833)
18:25:53.282 [main] ERROR io.dockstore.client.cli.nested.BaseLanguageClient - Problem running launcherCromwell:
java.lang.IllegalStateException: problems running command: {}java -jar /home/jaruga/.dockstore/libraries/cromwell-77.jar run --inputs /tmp/foo6508558916161670147json /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl
at io.dockstore.common.Utilities.executeCommand(Utilities.java:192)
at io.dockstore.common.Utilities.executeCommand(Utilities.java:107)
at io.dockstore.client.cli.nested.BaseLauncher.executeEntry(BaseLauncher.java:121)
at io.dockstore.client.cli.nested.BaseLanguageClient.commonExecutionCode(BaseLanguageClient.java:429)
at io.github.collaboratory.wdl.WDLClient.executeEntry(WDLClient.java:144)
at io.dockstore.client.cli.nested.BaseLanguageClient.launchPipeline(BaseLanguageClient.java:204)
at io.github.collaboratory.wdl.WDLClient.launch(WDLClient.java:72)
at io.dockstore.client.cli.nested.AbstractEntryClient.launchWdl(AbstractEntryClient.java:1470)
at io.dockstore.client.cli.nested.AbstractEntryClient.checkEntryFile(AbstractEntryClient.java:913)
at io.dockstore.client.cli.nested.AbstractEntryClient.launch(AbstractEntryClient.java:1378)
at io.dockstore.client.cli.nested.AbstractEntryClient.processEntryCommands(AbstractEntryClient.java:312)
at io.dockstore.client.cli.Client.run(Client.java:737)
at io.dockstore.client.cli.Client.main(Client.java:633)
Caused by: org.apache.commons.exec.ExecuteException: problems running command: {}java -jar /home/jaruga/.dockstore/libraries/cromwell-77.jar run --inputs /tmp/foo6508558916161670147json /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl (Exit value: 1)
at io.dockstore.common.Utilities.executeCommand(Utilities.java:188)
... 12 common frames omitted
Cromwell exit code: 1
18:25:53.284 [main] ERROR io.dockstore.client.cli.ArgumentUtility - problems running command: [java, -jar, /home/jaruga/.dockstore/libraries/cromwell-77.jar, run, --inputs, /tmp/foo6508558916161670147json, /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl] (Exit value: 1)
18:25:53.285 [main] ERROR io.dockstore.client.cli.ArgumentUtility - org.apache.commons.exec.ExecuteException: problems running command: [java, -jar, /home/jaruga/.dockstore/libraries/cromwell-77.jar, run, --inputs, /tmp/foo6508558916161670147json, /home/jaruga/git/GargGroup/BioDivGenomics/bio-diversity-genomics-garg.wdl] (Exit value: 1)
at io.dockstore.client.cli.nested.BaseLanguageClient.commonExecutionCode(BaseLanguageClient.java:436)
at io.github.collaboratory.wdl.WDLClient.executeEntry(WDLClient.java:144)
at io.dockstore.client.cli.nested.BaseLanguageClient.launchPipeline(BaseLanguageClient.java:204)
at io.github.collaboratory.wdl.WDLClient.launch(WDLClient.java:72)
at io.dockstore.client.cli.nested.AbstractEntryClient.launchWdl(AbstractEntryClient.java:1470)
at io.dockstore.client.cli.nested.AbstractEntryClient.checkEntryFile(AbstractEntryClient.java:913)
at io.dockstore.client.cli.nested.AbstractEntryClient.launch(AbstractEntryClient.java:1378)
at io.dockstore.client.cli.nested.AbstractEntryClient.processEntryCommands(AbstractEntryClient.java:312)
at io.dockstore.client.cli.Client.run(Client.java:737)
at io.dockstore.client.cli.Client.main(Client.java:633)
make: *** [Makefile:15: run] Error 3
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