junaruga

$ make run 2>&1 | tee make_run.log
dockstore tool launch \
	--local-entry "bio-diversity-genomics-garg.wdl" \
	--json "bio-diversity-genomics-garg.inputs.json"
Created temporary working directory at '/tmp/1662486643407-0'
Using local file 'bio-diversity-genomics-garg.wdl' as primary descriptor
Creating directories for run of Dockstore launcher in current working directory: /home/jaruga/git/GargGroup/BioDivGenomics
Provisioning your input files to your local machine
Downloading: BioDivGenomics.input_file from hifi_input.fastq to: /home/jaruga/git/GargGroup/BioDivGenomics/cromwell-input/fe1365e5-3a5b-4166-be1d-087386294496/hifi_input.fastq
Calling out to Cromwell to run your workflow

junaruga

$ cat /etc/fedora-release 
Fedora release 36 (Thirty Six)

$ which podman
/bin/podman

$ which docker
~/.local/bin/docker

$ ls -l ~/.local/bin/docker 

junaruga

FROM docker.io/ubuntu:20.04

ENV FASTK_COMMIT=f18a4e6d2207539f7b84461daebc54530a9559b0
ENV FASTK_DEST_DIR=/usr/local/bin/

# Install dependencies.
RUN apt update
RUN apt install -y \
  gcc \
  git \

junaruga

$ java --version 
openjdk 17.0.4 2022-07-19
OpenJDK Runtime Environment (Red_Hat-17.0.4.0.8-1.fc36) (build 17.0.4+8)
OpenJDK 64-Bit Server VM (Red_Hat-17.0.4.0.8-1.fc36) (build 17.0.4+8, mixed mode, sharing)

$ scala --version
Scala code runner version 2.13.8 -- Copyright 2002-2021, LAMP/EPFL and Lightbend, Inc.

$ sbt --version
WARNING: A terminally deprecated method in java.lang.System has been called

junaruga

For the announce https://community.frame.work/t/now-available-for-pre-order-in-uk-germany-and-france/12359, while I appreciate the consideration to decide the countries based on numbers on the region page. I, who already have the Framework Laptop, didn't register it because I was afraid the selection changes other functionalities such as language experience on the website as I liked English. So, I am curious about this poll on this forum. There are 2 polls: region and country.

If you don't know which region your country will belong to, you can check the following country list. I added the region too. The names of the region and country are by dictionary order and including every countries including micro countries based on the wiki page. To use browswer search, you can press Ctrl (Windows/Linux) or Apple key (Mac) + F 2 times to avoid the search is highjacked by Discourse. And [here](https://meta.discourse.org/t/how-to-create-polls/77548) is Discourse poll building manual.

Please note only people who alread

junaruga

1: Abkhazia, Asia
2: Afghanistan, Asia
3: Albania, Europe
4: Algeria, Africa
5: American Samoa (United States), Oceania
6: Andorra, Europe
7: Angola, Africa
8: Anguilla (United Kingdom), Americas
9: Antigua and Barbuda, Americas
10: Argentina, Americas

junaruga

[mockbuild@0838dc6f5d5545e88ac9166d5017e88c cve-2020-36327]$ ./runtest.sh 
* Arguments
  * SERVER: geminabox
  * RUBYOPT: 
  * TEST_SILENT: true
  * TEST_GEM_VERBOSE: 
  * TEST_BUNDLE: bundle
  * TEST_BUNDLE_DEBUG: 
  * TEST_BUNDLE_VERBOSE: 
  * TEST_BUNDLE_INSTALL_INDEX: 

junaruga

+ make test-bundler V=1 'RSPECOPTS=--format d' BUNDLER_SPECS=bundler/definition_dep_confusion_spec.rb
# rm -f revision.h
# exit > revision.h || exit > revision.h
./miniruby -I./lib -I. -I.ext/common  ./tool/runruby.rb --extout=.ext  -- --disable-gems -C "." bin/gem install --no-document \
	--install-dir .bundle --conservative "rspec:~> 3.5"
Successfully installed rspec-support-3.10.3
Successfully installed rspec-core-3.10.1
Successfully installed diff-lcs-1.4.4
Successfully installed rspec-expectations-3.10.1
Successfully installed rspec-mocks-3.10.2

junaruga

[mockbuild@0c20d978b71742d9a2748f28467f17a3 cve-2020-36327]$ SERVER=gem-server BUNDLE_WARN_ON_DEPENDENCY_CONFUSION=1 ./runtest.sh
* Arguments
  * SERVER: gem-server
  * TEST_SILENT: true
  * TEST_GEM_VERBOSE: 
  * TEST_BUNDLE_DEBUG: 
  * TEST_BUNDLE_VERBOSE: 
  * TEST_BUNDLE_INSTALL_INDEX: 
* Building gem with gemspec file /mnt/cve-2020-36327/test/fixtures/gems/foo/foo.gemspec ...
* Building gem with gemspec file /mnt/cve-2020-36327/test/fixtures/gems/c-0.0.2/c.gemspec ...

junaruga

[mockbuild@0c20d978b71742d9a2748f28467f17a3 cve-2020-36327]$ SERVER=gem-server ./runtest.sh
* Arguments
  * SERVER: gem-server
  * TEST_SILENT: true
  * TEST_GEM_VERBOSE: 
  * TEST_BUNDLE_DEBUG: 
  * TEST_BUNDLE_VERBOSE: 
  * TEST_BUNDLE_INSTALL_INDEX: 
* Building gem with gemspec file /mnt/cve-2020-36327/test/fixtures/gems/foo/foo.gemspec ...
* Building gem with gemspec file /mnt/cve-2020-36327/test/fixtures/gems/c-0.0.2/c.gemspec ...