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kayarre/2018-11-15-Scene.mrml

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mrml scene for 3d slicer
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2018-11-15-Scene.mrml
<?xml version="1.0" encoding="ISO-8859-1"?>
<MRML version="Slicer4.4.0" userTags="">
<Crosshair
id="vtkMRMLCrosshairNodedefault" name="Crosshair" hideFromEditors="true" selectable="true" selected="false" singletonTag="default" crosshairMode="NoCrosshair" navigation="false" crosshairBehavior="OffsetJumpSlice" crosshairThickness="Fine" crosshairRAS="0 0 0"></Crosshair>
<Selection
id="vtkMRMLSelectionNodeSingleton" name="Selection" hideFromEditors="true" selectable="true" selected="false" singletonTag="Singleton" frequencyUnitNodeRef="vtkMRMLUnitNodeApplicationFrequency" intensityUnitNodeRef="vtkMRMLUnitNodeApplicationIntensity" lengthUnitNodeRef="vtkMRMLUnitNodeApplicationLength" timeUnitNodeRef="vtkMRMLUnitNodeApplicationTime" velocityUnitNodeRef="vtkMRMLUnitNodeApplicationVelocity" references="unit/frequency:vtkMRMLUnitNodeApplicationFrequency;unit/intensity:vtkMRMLUnitNodeApplicationIntensity;unit/length:vtkMRMLUnitNodeApplicationLength;unit/time:vtkMRMLUnitNodeApplicationTime;unit/velocity:vtkMRMLUnitNodeApplicationVelocity;" activeVolumeID="vtkMRMLScalarVolumeNode1" secondaryVolumeID="NULL" activeLabelVolumeID="vtkMRMLLabelMapVolumeNode1" activeFiducialListID="NULL" activePlaceNodeID="NULL" activePlaceNodeClassName="NULL" activeROIListID="NULL" activeCameraID="NULL" activeTableID="NULL" activeViewID="NULL" activeLayoutID="NULL" activePlotChartID="NULL" ></Selection>
<Interaction
id="vtkMRMLInteractionNodeSingleton" name="Interaction" hideFromEditors="true" selectable="true" selected="false" singletonTag="Singleton" currentInteractionMode="ViewTransform" placeModePersistence="false" lastInteractionMode="ViewTransform" ></Interaction>
<View
id="vtkMRMLViewNode1" name="View1" hideFromEditors="false" selectable="true" selected="false" singletonTag="1" attributes="MappedInLayout:1" layoutLabel="1" layoutName="1" active="false" visibility="true" backgroundColor="0.756863 0.764706 0.909804" backgroundColor2="0.454902 0.470588 0.745098" layoutColor="0.454902 0.513725 0.913725" orientationMarkerType="none" orientationMarkerSize="medium" rulerType="none" AxisLabels="L;R;P;A;I;S" fieldOfView="200" letterSize="0.05" boxVisible="true" fiducialsVisible="true" fiducialLabelsVisible="true" axisLabelsVisible="true" axisLabelsCameraDependent="true" animationMode="Off" viewAxisMode="LookFrom" spinDegrees="2" spinMs="5" spinDirection="YawLeft" rotateDegrees="5" rockLength="200" rockCount="0" stereoType="NoStereo" renderMode="Perspective" useDepthPeeling="0" gpuMemorySize="0" expectedFPS="8" volumeRenderingQuality="Adaptive" raycastTechnique="Composite" volumeRenderingSurfaceSmoothing="0" volumeRenderingOversamplingFactor="2" linkedControl="0" ></View>
<Slice
id="vtkMRMLSliceNodeRed" name="Red" hideFromEditors="false" selectable="true" selected="false" singletonTag="Red" attributes="MappedInLayout:1" layoutLabel="R" layoutName="Red" active="false" visibility="true" backgroundColor="0 0 0" backgroundColor2="0 0 0" layoutColor="0.952941 0.290196 0.2" orientationMarkerType="none" orientationMarkerSize="medium" rulerType="none" AxisLabels="L;R;P;A;I;S" fieldOfView="367.623 186.988 0.562479" dimensions="926 471 1" xyzOrigin="0 0 0" sliceResolutionMode="1" uvwExtents="367.623 186.988 0.562479" uvwDimensions="256 256 1" uvwOrigin="0 0 0" activeSlice="0" layoutGridRows="1" layoutGridColumns="1" sliceToRAS="-1 0 0 -7.85365 0 1 0 10.7995 0 0 1 14.1502 0 0 0 1" orientationMatrixAxial="-1 0 0 0 1 0 0 0 1" orientationMatrixSagittal="0 0 1 -1 0 0 0 1 0" orientationMatrixCoronal="-1 0 0 0 0 1 0 1 0" orientation="Axial" orientationReference="Axial" jumpMode="1" sliceVisibility="false" widgetVisibility="false" useLabelOutline="false" sliceSpacingMode="0" prescribedSliceSpacing="1 1 1" ></Slice>
<Slice
id="vtkMRMLSliceNodeYellow" name="Yellow" hideFromEditors="false" selectable="true" selected="false" singletonTag="Yellow" attributes="MappedInLayout:1" layoutLabel="Y" layoutName="Yellow" active="false" visibility="true" backgroundColor="0 0 0" backgroundColor2="0 0 0" layoutColor="0.929412 0.835294 0.298039" orientationMarkerType="none" orientationMarkerSize="medium" rulerType="none" AxisLabels="L;R;P;A;I;S" fieldOfView="194.2 98.568 0.560028" dimensions="926 470 1" xyzOrigin="0 45.5091 0" sliceResolutionMode="1" uvwExtents="194.2 98.568 0.560028" uvwDimensions="256 256 1" uvwOrigin="0 0 0" activeSlice="0" layoutGridRows="1" layoutGridColumns="1" sliceToRAS="0 0 1 -7.91169 -1 0 0 10.7995 0 1 0 13.9643 0 0 0 1" orientationMatrixAxial="-1 0 0 0 1 0 0 0 1" orientationMatrixSagittal="0 0 1 -1 0 0 0 1 0" orientationMatrixCoronal="-1 0 0 0 0 1 0 1 0" orientation="Sagittal" orientationReference="Sagittal" jumpMode="1" sliceVisibility="false" widgetVisibility="false" useLabelOutline="false" sliceSpacingMode="0" prescribedSliceSpacing="1 1 1" ></Slice>
<Slice
id="vtkMRMLSliceNodeGreen" name="Green" hideFromEditors="false" selectable="true" selected="false" singletonTag="Green" attributes="MappedInLayout:1" layoutLabel="G" layoutName="Green" active="false" visibility="true" backgroundColor="0 0 0" backgroundColor2="0 0 0" layoutColor="0.431373 0.690196 0.294118" orientationMarkerType="none" orientationMarkerSize="medium" rulerType="none" AxisLabels="L;R;P;A;I;S" fieldOfView="376.758 191.434 0.562494" dimensions="925 470 1" xyzOrigin="0 0 0" sliceResolutionMode="1" uvwExtents="376.758 191.434 0.562494" uvwDimensions="256 256 1" uvwOrigin="0 0 0" activeSlice="0" layoutGridRows="1" layoutGridColumns="1" sliceToRAS="-1 0 0 -7.85365 0 0 1 10.961 0 1 0 13.9643 0 0 0 1" orientationMatrixAxial="-1 0 0 0 1 0 0 0 1" orientationMatrixSagittal="0 0 1 -1 0 0 0 1 0" orientationMatrixCoronal="-1 0 0 0 0 1 0 1 0" orientation="Coronal" orientationReference="Coronal" jumpMode="1" sliceVisibility="false" widgetVisibility="false" useLabelOutline="false" sliceSpacingMode="0" prescribedSliceSpacing="1 1 1" ></Slice>
<Layout
id="vtkMRMLLayoutNodevtkMRMLLayoutNode" name="Layout" hideFromEditors="true" selectable="true" selected="false" singletonTag="vtkMRMLLayoutNode" currentViewArrangement="3" guiPanelVisibility="1" bottomPanelVisibility ="1" guiPanelLR="0" collapseSliceControllers="0"
numberOfCompareViewRows="1" numberOfCompareViewColumns="1" numberOfLightboxRows="6" numberOfLightboxColumns="6" mainPanelSize="400" secondaryPanelSize="400" ></Layout>
<SliceComposite
id="vtkMRMLSliceCompositeNodeRed" name="SliceComposite" hideFromEditors="true" selectable="true" selected="false" singletonTag="Red" backgroundVolumeID="vtkMRMLScalarVolumeNode1" foregroundVolumeID="" labelVolumeID="vtkMRMLLabelMapVolumeNode1" compositing="0" foregroundOpacity="0" labelOpacity="1" linkedControl="0" fiducialVisibility="1" fiducialLabelVisibility="1" sliceIntersectionVisibility="0" layoutName="Red" annotationSpace="IJKAndRAS" annotationMode="All" doPropagateVolumeSelection="1" ></SliceComposite>
<SliceComposite
id="vtkMRMLSliceCompositeNodeYellow" name="SliceComposite_1" hideFromEditors="true" selectable="true" selected="false" singletonTag="Yellow" backgroundVolumeID="vtkMRMLScalarVolumeNode1" foregroundVolumeID="" labelVolumeID="vtkMRMLLabelMapVolumeNode1" compositing="0" foregroundOpacity="0" labelOpacity="1" linkedControl="0" fiducialVisibility="1" fiducialLabelVisibility="1" sliceIntersectionVisibility="0" layoutName="Yellow" annotationSpace="IJKAndRAS" annotationMode="All" doPropagateVolumeSelection="1" ></SliceComposite>
<SliceComposite
id="vtkMRMLSliceCompositeNodeGreen" name="SliceComposite_2" hideFromEditors="true" selectable="true" selected="false" singletonTag="Green" backgroundVolumeID="vtkMRMLScalarVolumeNode1" foregroundVolumeID="" labelVolumeID="vtkMRMLLabelMapVolumeNode1" compositing="0" foregroundOpacity="0" labelOpacity="1" linkedControl="0" fiducialVisibility="1" fiducialLabelVisibility="1" sliceIntersectionVisibility="0" layoutName="Green" annotationSpace="IJKAndRAS" annotationMode="All" doPropagateVolumeSelection="1" ></SliceComposite>
<Camera
id="vtkMRMLCameraNode1" name="Camera" hideFromEditors="false" selectable="true" selected="false" userTags="" position="0 500 0" focalPoint="0 0 0" viewUp="0 0 1" parallelProjection="false" parallelScale="1" viewAngle="30" activetag="vtkMRMLViewNode1" appliedTransform="1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 1" ></Camera>
<SubjectHierarchy
id="vtkMRMLSubjectHierarchyNode1" name="SubjectHierarchy" hideFromEditors="false" selectable="true" selected="false" attributes="SubjectHierarchyVersion:2" >
<SubjectHierarchyItem id="3" name="Scene" parent="0" type="" expanded="true" attributes="Level^Scene|">
<SubjectHierarchyItem id="9" dataNode="vtkMRMLScalarVolumeNode1" parent="3" type="Volumes" expanded="true"></SubjectHierarchyItem>
<SubjectHierarchyItem id="10" dataNode="vtkMRMLLabelMapVolumeNode1" parent="3" type="LabelMaps" expanded="true"></SubjectHierarchyItem></SubjectHierarchyItem></SubjectHierarchy>
<ClipModels
id="vtkMRMLClipModelsNodevtkMRMLClipModelsNode" name="ClipModels" hideFromEditors="true" selectable="true" selected="false" singletonTag="vtkMRMLClipModelsNode" clipType="0" redSliceClipState="0" yellowSliceClipState="0" greenSliceClipState="0" ></ClipModels>
<ScriptedModule
id="vtkMRMLScriptedModuleNodeDataProbe" name="ScriptedModule" hideFromEditors="true" selectable="true" selected="false" singletonTag="DataProbe" ModuleName ="DataProbe" ></ScriptedModule>
<VolumeDisplay
id="vtkMRMLScalarVolumeDisplayNode1" name="VolumeDisplay" hideFromEditors="true" selectable="true" selected="false" color="0.5 0.5 0.5" edgeColor="0 0 0" selectedColor="1 0 0" selectedAmbient="0.4" ambient="0" diffuse="1" selectedSpecular="0.5" specular="0" power="1" opacity="1" sliceIntersectionOpacity="1" pointSize="1" lineWidth="1" representation="2" lighting="true" interpolation="1" shading="true" visibility="true" edgeVisibility="false" clipping="false" sliceIntersectionVisibility="false" sliceIntersectionThickness="1" frontfaceCulling="false" backfaceCulling="true" scalarVisibility="false" vectorVisibility="false" tensorVisibility="false" interpolateTexture="false" scalarRangeFlag="UseData" scalarRange="0 100" colorNodeID="vtkMRMLColorTableNodeGrey" window="0.54" level="1.968" upperThreshold="32767" lowerThreshold="-32768" interpolate="1" windowLevelLocked="false" autoWindowLevel="1" applyThreshold="0" autoThreshold="0" ></VolumeDisplay>
<VolumeArchetypeStorage
id="vtkMRMLVolumeArchetypeStorageNode4" name="VolumeArchetypeStorage_3" hideFromEditors="true" selectable="true" selected="false" fileName="../caseFiles/mri/VWI_proj/case3/normalization/VWI_post_air_levelset.nrrd" useCompression="1" defaultWriteFileExtension="nrrd" readState="0" writeState="0" centerImage="0" UseOrientationFromFile="1" ></VolumeArchetypeStorage>
<Volume
id="vtkMRMLScalarVolumeNode1" name="VWI_post_air_levelset" hideFromEditors="false" selectable="true" selected="false" displayNodeRef="vtkMRMLScalarVolumeDisplayNode1" storageNodeRef="vtkMRMLVolumeArchetypeStorageNode4" references="display:vtkMRMLScalarVolumeDisplayNode1;storage:vtkMRMLVolumeArchetypeStorageNode4;" userTags="" ijkToRASDirections="-0.0479139 0.0904735 0.994746 -0.998851 -0.00433996 -0.0477169 3.93798e-08 -0.995889 0.0905776 " spacing="0.5625 0.5625 0.560002" origin="-78.2407 103.998 97.2528" ></Volume>
<CommandLineModule
id="vtkMRMLCommandLineModuleNode1" name="Threshold Scalar Volume" hideFromEditors="true" selectable="true" selected="false" attributes="CommandLineModule:Threshold Scalar Volume;UpdateDisplay:true" title="Threshold%20Scalar%20Volume" version="0.1.0.$Revision:%202104%20$(alpha)" autorunmode="17" autorun="0" InputVolume="vtkMRMLScalarVolumeNode1" OutputVolume="vtkMRMLLabelMapVolumeNode1" ThresholdType="Below" ThresholdValue="-0.01" Lower="1" Upper="200" OutsideValue="1" Negate="false" ></CommandLineModule>
<LabelMapVolume
id="vtkMRMLLabelMapVolumeNode1" name="Output Volume" hideFromEditors="false" selectable="true" selected="false" displayNodeRef="vtkMRMLLabelMapVolumeDisplayNode1" storageNodeRef="vtkMRMLVolumeArchetypeStorageNode2" references="display:vtkMRMLLabelMapVolumeDisplayNode1;storage:vtkMRMLVolumeArchetypeStorageNode2;" userTags="" ijkToRASDirections="-0.0479139 0.0904735 0.994746 -0.998851 -0.00433996 -0.0477169 3.93798e-08 -0.995889 0.0905776 " spacing="0.5625 0.5625 0.560002" origin="-78.2407 103.998 97.2528" ></LabelMapVolume>
<VolumeArchetypeStorage
id="vtkMRMLVolumeArchetypeStorageNode2" name="VolumeArchetypeStorage_1" hideFromEditors="true" selectable="true" selected="false" fileName="Output%20Volume.nrrd" useCompression="1" defaultWriteFileExtension="nrrd" readState="0" writeState="0" centerImage="0" UseOrientationFromFile="1" ></VolumeArchetypeStorage>
<LabelMapVolumeDisplay
id="vtkMRMLLabelMapVolumeDisplayNode1" name="LabelMapVolumeDisplay" hideFromEditors="true" selectable="true" selected="false" color="0.5 0.5 0.5" edgeColor="0 0 0" selectedColor="1 0 0" selectedAmbient="0.4" ambient="0" diffuse="1" selectedSpecular="0.5" specular="0" power="1" opacity="1" sliceIntersectionOpacity="1" pointSize="1" lineWidth="1" representation="2" lighting="true" interpolation="1" shading="true" visibility="true" edgeVisibility="false" clipping="false" sliceIntersectionVisibility="false" sliceIntersectionThickness="3" frontfaceCulling="false" backfaceCulling="true" scalarVisibility="false" vectorVisibility="false" tensorVisibility="false" interpolateTexture="false" scalarRangeFlag="UseData" scalarRange="0 100" colorNodeID="vtkMRMLColorTableNodeLabels" ></LabelMapVolumeDisplay>
</MRML>
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