CEGMA Committee work
RMBlast utilizes NCBI BLAST+ but you have to download a separate BLAST binary from NCBI. See the RMBlast page at RepeatMasker's website for details.
These instructions were originally provided by Michelle Gill and lightly adapted for our use.
Running this on lab server with sysadmin account
curl -O http://repo.continuum.io/miniconda/Miniconda-3.4.2-MacOSX-x86_64.sh
chmod +x Miniconda-3.4.2-MacOSX-x86_64.sh
sudo ./chmod +x Miniconda-3.4.2-MacOSX-x86_64.sh
First install cvs2svn. This includes a
cvs2git command. Then proceed to make dump files from the old repository (you must be on the korflab server machine at this point). The instructions to do this are taken from those on the cvs2svn website. Because we used one monolithic CVS repository for all projects, I used the following steps to migrate one CVS module at a time (not all CVS modules need to end up on GitHub):
cd ~/Work/Code mkdir cvs2git-tmp cvs2git --blobfile=cvs2git-tmp/git-blob.dat --dumpfile=cvs2git-tmp/git-dump.dat --username=keith /Volumes/Data/cvsroot/Assemblathon/ git init Assemblathon cd Assemblathon