Last active
January 24, 2019 11:57
-
-
Save kouichi-c-nakamura/1fee6b8b33a227d47854224fa185bb94 to your computer and use it in GitHub Desktop.
MATLAB function for OMERO Java Gateway. See https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=8615#p20473
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
function fac = getGatewayFacility(gateway,classname) | |
% getGatewayFacility is a MATLAB function to be used with OMERO Java | |
% Gateway. | |
% | |
% in Java, the following code returns the XxxxxFacility object fac. | |
% XxxxxFacility fac = gateway.getFacility(XxxxxFacility.class) | |
% | |
% However, running the same code in MATLAB requires special handling and | |
% this functions does that for you. For more details, see | |
% https://docs.openmicroscopy.org/latest/omero/developers/Java.html | |
% http://www.openmicroscopy.org/community/viewtopic.php?f=6&t=8615 | |
% | |
% | |
% SYNTAX | |
% fac = getGatewayFacility(classname) | |
% | |
% INPUT ARGUMENTS | |
% classname 'AdminFacility' | 'BrowseFacility' | 'DataManagerFacility' | | |
% 'Facility' | 'MetadataFacility' | 'RawDataFacility' | | |
% 'ROIFacility' | 'SearchFacility' | 'TablesFacility' | | |
% 'TablesFacilityHelper' | 'TransferFacility' | | |
% 'TransferFacilityHelper' | |
% | |
% omero.gateway.facility Java class name in char row vector | |
% eg. 'BrowseFacility' for omero.gateway.facility.BrowseFacility | |
% | |
% https://downloads.openmicroscopy.org/latest/omero/api//omero/gateway/facility/package-summary.html | |
% | |
% OUTPUT ARGUMENTS | |
% fac omero.gateway.facility.XxxxxxFacility Java object | |
% | |
% | |
% EXAMPLE | |
% browse = getGatewayFacility(gateway,'BrowseFacility') | |
% | |
% Written by Kouichi C. Nakamura Ph.D. | |
% MRC Brain Network Dynamics Unit | |
% University of Oxford | |
% kouichi.c.nakamura@gmail.com | |
% 23-Jan-2019 16:07:10 | |
% | |
% See also | |
% https://docs.openmicroscopy.org/latest/omero/developers/Java.html#read-data | |
% http://www.openmicroscopy.org/community/viewtopic.php?f=6&t=8615 | |
%TODO by convetion, it's better to be getFacility, but this name confilcts | |
% with gateway object's getFacility method. | |
%TODO it is possible to check classname | |
clazz = java.lang.Class.forName(['omero.gateway.facility.',classname ], ... | |
false, gateway.getClass().getClassLoader()); | |
fac = gateway.getFacility(clazz); |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment