<script type="module" src="https://togostanza.github.io/openstanza/manhattan-plot.js" async></script>
<togostanza-manhattan-plot
data-url="https://raw.githubusercontent.com/togostanza/openstanza/main/stanzas/manhattan-plot/assets/manhattan-plot.json"
chromosomeKey="chr"
Toshiaki Katayama ktym
ktym
/ tree-data.json
Last active
December 28, 2022 05:53
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| [ | |
| { | |
| "id": 0, | |
| "value": "My Home", | |
| "label": "My Home", | |
| "children": [1, 31, 39] | |
| }, | |
| { | |
| "id": 1, | |
| "value": "transcript_variant", |
ktym
/ togodx-idconvert-route.tsv
Last active
May 17, 2022 10:21
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| source | route | target | |
|---|---|---|---|
| ensembl_gene | uniprot,reactome_reaction | chebi | |
| ensembl_gene | uniprot,reactome_reaction,chebi | chembl_compound | |
| ensembl_gene | uniprot | chembl_target | |
| ensembl_gene | uniprot | glytoucan | |
| ensembl_gene | hgnc | ||
| ensembl_gene | ncbigene,medgen | hp | |
| ensembl_gene | ncbigene | medgen | |
| ensembl_gene | ncbigene,medgen | mesh | |
| ensembl_gene | ncbigene,medgen | mondo |
ktym
/ swagger-config.yaml
Last active
March 17, 2022 07:21
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| swagger: '2.0' | |
| info: | |
| title: Togo ID API | |
| version: 2.0.0 | |
| host: api.togoid.dbcls.jp.il3c.com | |
| schemes: | |
| - https | |
| produces: | |
| - application/json | |
| tags: |
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| series | key | value | |
|---|---|---|---|
| 2020-12-28 | 1 | 0 | |
| 2020-12-28 | 1.38.1 | 0 | |
| 2020-12-28 | 1.38.1.3 | 0 | |
| 2020-12-28 | 1.38.1.4 | 0 | |
| 2020-12-28 | 1.1 | 0 | |
| 2021-01-04 | 1 | 0 | |
| 2021-01-04 | 1.38.1 | 0 | |
| 2021-01-04 | 1.38.1.3 | 0 | |
| 2021-01-04 | 1.38.1.4 | 0 |
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| series | key | value | |
|---|---|---|---|
| 2021-01-01 | 1 | 0 | |
| 2021-01-01 | 1.38.1 | 0 | |
| 2021-01-01 | 1.38.1.3 | 0 | |
| 2021-01-01 | 1.38.1.4 | 0 | |
| 2021-01-01 | 1.1 | 0 | |
| 2021-01-02 | 1 | 0 | |
| 2021-01-02 | 1.38.1 | 0 | |
| 2021-01-02 | 1.38.1.3 | 0 | |
| 2021-01-02 | 1.38.1.4 | 0 |
ktym
/ rdf-config-metastanza-test.json
Created
April 8, 2021 07:56
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| [ | |
| { | |
| "refex_id": "RFX0000113860", | |
| "ex_value": "7.4464837623184", | |
| "see_also": "http://www.ncbi.nlm.nih.gov/gene/308", | |
| "RefExSample": "http://refex.dbcls.jp/sample/RES00000436", | |
| "sample_id": "RES00000436", | |
| "taxonomy": "http://identifiers.org/taxonomy/9606", | |
| "age": "21", | |
| "stage": "adult", |
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| { | |
| "head": { | |
| "link": [], | |
| "vars": [ | |
| "hgnc_uri", | |
| "gene_symbol", | |
| "approved_name", | |
| "chromosomal_location", | |
| "alias", | |
| "ncbigene", |
ktym
/ hint.graphql
Last active
March 10, 2020 07:32
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| """ | |
| Example RDF/Turtle: | |
| hnt:A0A024QYV7-Q00653 | |
| bp3:dataSource <http://identifiers.org/HINT> ; | |
| bp3:displayName "A0A024QYV7-Q00653"^^xsd:string ; | |
| bp3:evidence pint:evidence-pubmed_14743216-MI_0007-literature-curated , pint:evidence-pubmed_14743216-MI_0676-literature-curated ; | |
| bp3:name "A0A024QYV7-Q00653"^^xsd:string ; | |
| bp3:participant [ | |
| obo:BFO_0000051 uni:A0A024QYV7 ; |
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| #!/usr/bin/env ruby | |
| =begin | |
| # Pairwise sequence alignment algorithms | |
| Currently implements Needleman-Wunsch, Smith-Waterman | |
| and Needleman-Wunsch-Gotoh algorithms based on | |
| the Dynamic Programming (DP). | |
| ## Coordinates |