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February 28, 2011 21:53
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pip-based rpy2 installation errors
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| ------------------------------------------------------------ | |
| /usr/local/bin/pip run on Mon Feb 28 16:53:05 2011 | |
| Downloading/unpacking rpy2 | |
| Running setup.py egg_info for package rpy2 | |
| running egg_info | |
| writing pip-egg-info/rpy2.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/rpy2.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/rpy2.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| Traceback (most recent call last): | |
| File "<string>", line 14, in <module> | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 372, in <module> | |
| [os.path.join('doc', 'source', 'rpy2_logo.png')])] | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/core.py", line 152, in setup | |
| dist.run_commands() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/dist.py", line 953, in run_commands | |
| self.run_command(cmd) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/dist.py", line 972, in run_command | |
| cmd_obj.run() | |
| File "<string>", line 12, in replacement_run | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 254, in find_sources | |
| mm.run() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 308, in run | |
| self.add_defaults() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 332, in add_defaults | |
| sdist.add_defaults(self) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/sdist.py", line 191, in add_defaults | |
| build_ext = self.get_finalized_command('build_ext') | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/cmd.py", line 312, in get_finalized_command | |
| cmd_obj.ensure_finalized() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized | |
| self.finalize_options() | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 111, in finalize_options | |
| config += get_rconfig(r_home, about) | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 264, in get_rconfig | |
| rc = RConfig.from_string(rconfig) | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 252, in from_string | |
| + '\nin string\n' + string) | |
| ValueError: Invalid substring | |
| in string | |
| Complete output from command python setup.py egg_info: | |
| running egg_info | |
| writing pip-egg-info/rpy2.egg-info/PKG-INFO | |
| writing top-level names to pip-egg-info/rpy2.egg-info/top_level.txt | |
| writing dependency_links to pip-egg-info/rpy2.egg-info/dependency_links.txt | |
| warning: manifest_maker: standard file '-c' not found | |
| Traceback (most recent call last): | |
| File "<string>", line 14, in <module> | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 372, in <module> | |
| [os.path.join('doc', 'source', 'rpy2_logo.png')])] | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/core.py", line 152, in setup | |
| dist.run_commands() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/dist.py", line 953, in run_commands | |
| self.run_command(cmd) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/dist.py", line 972, in run_command | |
| cmd_obj.run() | |
| File "<string>", line 12, in replacement_run | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 254, in find_sources | |
| mm.run() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 308, in run | |
| self.add_defaults() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/egg_info.py", line 332, in add_defaults | |
| sdist.add_defaults(self) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/distribute-0.6.14-py2.7.egg/setuptools/command/sdist.py", line 191, in add_defaults | |
| build_ext = self.get_finalized_command('build_ext') | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/cmd.py", line 312, in get_finalized_command | |
| cmd_obj.ensure_finalized() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/distutils/cmd.py", line 109, in ensure_finalized | |
| self.finalize_options() | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 111, in finalize_options | |
| config += get_rconfig(r_home, about) | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 264, in get_rconfig | |
| rc = RConfig.from_string(rconfig) | |
| File "/usr/local/var/pip/build/rpy2/setup.py", line 252, in from_string | |
| + '\nin string\n' + string) | |
| ValueError: Invalid substring | |
| in string | |
| ---------------------------------------- | |
| Command python setup.py egg_info failed with error code 1 | |
| Exception information: | |
| Traceback (most recent call last): | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/pip-0.8.2-py2.7.egg/pip/basecommand.py", line 130, in main | |
| self.run(options, args) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/pip-0.8.2-py2.7.egg/pip/commands/install.py", line 223, in run | |
| requirement_set.prepare_files(finder, force_root_egg_info=self.bundle, bundle=self.bundle) | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/pip-0.8.2-py2.7.egg/pip/req.py", line 941, in prepare_files | |
| req_to_install.run_egg_info() | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/pip-0.8.2-py2.7.egg/pip/req.py", line 219, in run_egg_info | |
| command_desc='python setup.py egg_info') | |
| File "/usr/local/Cellar/python/2.7.1/lib/python2.7/site-packages/pip-0.8.2-py2.7.egg/pip/__init__.py", line 249, in call_subprocess | |
| % (command_desc, proc.returncode)) | |
| InstallationError: Command python setup.py egg_info failed with error code 1 |
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