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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #11744

Test report for https://github.com/easybuilders/easybuild-easyconfigs/pull/11744

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS velocyto-0.17.17-intel-2020a-Python-3.8.2.eb

Time info

  • start: Fri, 27 Nov 2020 19:30:29 +0000 (UTC)
  • end: Fri, 27 Nov 2020 19:32:45 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.3.2.dev0-r9ac76b2caff754650e71f3680b4541f6c5615413
  • easybuild-easyblocks version: 4.3.2.dev0-r751d625d84f91b341e0fd00023812537732681bb
  • command line:
eb -f -T --robot=/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs --prefix=/user/brussel/101/vsc10122/.local/easybuild-ivybridge --tmpdir=/user/brussel/101/vsc10122/.local/easybuild-ivybridge/tmp --parallel=4 --from-pr 11744 --rebuild --upload-test-report
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--force
--from-pr='11744'
--generate-devel-module
--git-working-dirs-path='/user/brussel/101/vsc10122/src'
--github-user='lexming'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/theia/home/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/packages'
--parallel='4'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/user/brussel/101/vsc10122/.local/easybuild-ivybridge'
--rebuild
--repository='FileRepository'
--repositorypath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/ebfiles_repo'
--robot-paths=':/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs'
--robot='/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs:/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmpdir='/user/brussel/101/vsc10122/.local/easybuild-ivybridge/tmp'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 4
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz
  • cpu speed: 2800.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) ;
  • glibc version: 2.17
  • hostname: node128.hydra.os
  • os name: centos linux
  • os type: Linux
  • os version: 7.9.2009
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Oct 14 2020, 14:45:30) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 128770

List of loaded modules

  • EasyBuild-develop

Environment

BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
EASYBUILD_GITHUB_USER = lexming
EASYBUILD_GIT_WORKING_DIRS_PATH = /user/brussel/101/vsc10122/src
EASYBUILD_PREFIX = /user/brussel/101/vsc10122/.local/easybuild-ivybridge
EB_SCRIPT_PATH = /user/brussel/101/vsc10122/src/easybuild-framework/eb
EDITOR = vim
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/brussel/101/vsc10122
HOSTNAME = node128.hydra.os
INTEL_LICENSE_FILE = /apps/brussel/licenses/intel.lic
LANG = C
LC_ALL = en_US.UTF-8
LC_MONETARY = nl_BE.UTF-8
LC_NUMERIC = nl_BE.UTF-8
LC_TIME = nl_BE.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-ivybridge-ib
LMOD_VERSION = 8.4.15
LOADEDMODULES = EasyBuild-develop
LOGNAME = vsc10122
LS_COLORS = 
MAIL = /var/spool/mail/vsc10122
MANPATH = :
MODULEPATH = /user/brussel/101/vsc10122/src/modules:/user/brussel/101/vsc10122/.local/easybuild-ivybridge/modules/all:/apps/brussel/CO7/ivybridge-ib/modules/2020b/all:/apps/brussel/CO7/ivybridge-ib/modules/2020a/all:/apps/brussel/CO7/ivybridge-ib/modules/2019b/all:/apps/brussel/CO7/ivybridge-ib/modules/2019a/all:/apps/brussel/CO7/ivybridge-ib/modules/2018b/all:/apps/brussel/CO7/ivybridge-ib/modules/2018a/all:/apps/brussel/CO7/ivybridge-ib/modules/2017b/all:/apps/brussel/CO7/ivybridge-ib/modules/2017a/all:/apps/brussel/CO7/ivybridge-ib/modules/2016b/all::/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
PATH = /user/brussel/101/vsc10122/src/easybuild-framework:/user/brussel/101/vsc10122/bin:/user/brussel/101/vsc10122/.local/bin:/usr/bin:/usr/sbin:/bin:/usr/local/sbin:/opt/ibutils/bin
PBS_ENVIRONMENT = PBS_BATCH
PBS_GPUFILE = /var/spool/torque/aux//3537240.master01.hydra.brussel.vscgpu
PBS_JOBCOOKIE = 94EC2CAE188170CDD4BC59B8125844DD
PBS_JOBID = 3537240.master01.hydra.brussel.vsc
PBS_JOBNAME = EB-test-11744
PBS_MICFILE = /var/spool/torque/aux//3537240.master01.hydra.brussel.vscmic
PBS_MOMPORT = 15003
PBS_NODEFILE = /var/spool/torque/aux//3537240.master01.hydra.brussel.vsc
PBS_NODENUM = 0
PBS_NP = 4
PBS_NUM_NODES = 1
PBS_NUM_PPN = 4
PBS_O_HOME = /user/brussel/101/vsc10122
PBS_O_HOST = login1.cerberus.brussel.vsc
PBS_O_LANG = en_GB.UTF-8
PBS_O_LOGNAME = vsc10122
PBS_O_MAIL = /var/spool/mail/vsc10122
PBS_O_PATH = /user/brussel/101/vsc10122/src/easybuild-framework:/user/brussel/101/vsc10122/bin:/user/brussel/101/vsc10122/.local/bin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin
PBS_O_QUEUE = submission
PBS_O_SERVER = master01.hydra.brussel.vsc
PBS_O_SHELL = /bin/bash
PBS_O_SUBMIT_FILTER = /usr/bin/submitfilter_brussel
PBS_O_WORKDIR = /theia/home/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs
PBS_QUEUE = smp
PBS_TASKNUM = 1
PBS_VERSION = TORQUE-6.1.3.h4
PBS_VNODENUM = 0
PBS_WALLTIME = 86400
PWD = /theia/home/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs
PYTHONOPTIMIZE = 1
PYTHONPATH = /user/brussel/101/vsc10122/.local/lib/python2.7/site-packages:/user/brussel/101/vsc10122/src/easybuild-easyconfigs:/user/brussel/101/vsc10122/src/easybuild-easyblocks:/user/brussel/101/vsc10122/src/easybuild-framework:/user/brussel/101/vsc10122/src/vsc-install/lib:/user/brussel/101/vsc10122/src/vsc-base/lib
SHELL = /bin/bash
SHLVL = 3
TMPDIR = /local/3537240.master01.hydra.brussel.vsc
USER = vsc10122
VISUAL = vim
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = ivybridge
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/brussel/101/vsc10122
VSC_DATA_VO = /data/brussel/vo/000/bvo00005
VSC_DATA_VO_USER = /data/brussel/vo/000/bvo00005/vsc10122
VSC_DEFAULT_CLUSTER_MODULE = hydra
VSC_HOME = /user/brussel/101/vsc10122
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/brussel/101/vsc10122
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/brussel/101/vsc10122
VSC_SCRATCH_THEIA = /theia/scratch/brussel/101/vsc10122
VSC_SCRATCH_THEIA_VO = /theia/scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_THEIA_VO_USER = /theia/scratch/brussel/vo/000/bvo00005/vsc10122
VSC_SCRATCH_VO = /scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_VO_USER = /scratch/brussel/vo/000/bvo00005/vsc10122
VSC_VO = bvo00005
WORKDIR = /scratch/brussel/101/vsc10122
_ = /usr/bin/python
_LMFILES_ = /user/brussel/101/vsc10122/src/modules/EasyBuild-develop
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = 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
_ModuleTable004_ = cHBzL2JydXNzZWwvQ083L2l2eWJyaWRnZS1pYi9tb2R1bGVzLzIwMTliL2FsbDovYXBwcy9icnVzc2VsL0NPNy9pdnlicmlkZ2UtaWIvbW9kdWxlcy8yMDE5YS9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvaXZ5YnJpZGdlLWliL21vZHVsZXMvMjAxOGIvYWxsOi9hcHBzL2JydXNzZWwvQ083L2l2eWJyaWRnZS1pYi9tb2R1bGVzLzIwMThhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9pdnlicmlkZ2UtaWIvbW9kdWxlcy8yMDE3Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvaXZ5YnJpZGdlLWliL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L2l2eWJyaWRnZS1pYi9tb2R1bGVzLzIwMTZiL2FsbDo6L2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0=
_ModuleTable_Sz_ = 4
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild-develop:1
__LMOD_REF_COUNT_MODULEPATH = /user/brussel/101/vsc10122/src/modules:1;/user/brussel/101/vsc10122/.local/easybuild-ivybridge/modules/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2020b/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2020a/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2019b/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2019a/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2018b/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2018a/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2017b/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2017a/all:1;/apps/brussel/CO7/ivybridge-ib/modules/2016b/all:1;/etc/modulefiles/vsc:1
__LMOD_REF_COUNT_PATH = /user/brussel/101/vsc10122/src/easybuild-framework:1;/user/brussel/101/vsc10122/bin:1;/user/brussel/101/vsc10122/.local/bin:1;/usr/bin:2;/usr/sbin:2;/bin:1;/usr/local/sbin:1;/opt/ibutils/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /user/brussel/101/vsc10122/.local/lib/python2.7/site-packages:1;/user/brussel/101/vsc10122/src/easybuild-easyconfigs:1;/user/brussel/101/vsc10122/src/easybuild-easyblocks:1;/user/brussel/101/vsc10122/src/easybuild-framework:1;/user/brussel/101/vsc10122/src/vsc-install/lib:1;/user/brussel/101/vsc10122/src/vsc-base/lib:1
__LMOD_REF_COUNT__LMFILES_ = /user/brussel/101/vsc10122/src/modules/EasyBuild-develop:1
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