Skip to content

Instantly share code, notes, and snippets.

@lucahammer

lucahammer/perf_3900x_ubuntu.ipynb

Last active February 26, 2020 13:32
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save lucahammer/cf4158d937063346bb82ee345c17665f to your computer and use it in GitHub Desktop.
Save lucahammer/cf4158d937063346bb82ee345c17665f to your computer and use it in GitHub Desktop.
Download ZIP
Performance Test. Ryzen 9 3900X Ubuntu 18.04
Display the source blob
Display the rendered blob
Raw
perf_3900x_ubuntu.ipynb
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Python Performance Tests\n",
"A small collection of operations that are typical for my daily work with real data to compare different setups."
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"scrolled": true
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Created `%t` as an alias for `%timeit`.\n",
"Created `%%t` as an alias for `%%timeit`.\n"
]
}
],
"source": [
"%alias_magic t timeit\n",
"\n",
"import pandas as pd\n",
"import dask.dataframe as dd\n",
"\n",
"df = pd.read_json('test-tweets.jsonl', lines=True)\n",
"dask_df = dd.from_pandas(df, npartitions=5)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Let's start with loading data. About half a million Tweet objects as json lines."
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"1min 3s ± 160 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t df = pd.read_json('test-tweets.jsonl', lines=True)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"For some multi-threaded processing I want the dataframe as a dask dataframe as well."
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"31.6 s ± 171 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df = dd.from_pandas(df, npartitions=5)"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"def get_full_text(row):\n",
" if row['truncated']:\n",
" return(row['extended_tweet']['full_text'])\n",
" return (row['text'])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Twitter hides the full text of Tweets with more than 140 characters in a sub-field. I want one column that has always the complete text."
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"27.1 s ± 510 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t df.apply(get_full_text, axis=1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Can this be done faster with Dask? "
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"44 s ± 222 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Maybe with processes instead of threads?"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"5min 57s ± 4.84 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute(scheduler='processes')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Or by computing it partition wise?"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"scrolled": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"45.5 s ± 171 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.map_partitions(lambda ldf: ldf.apply(get_full_text, axis=1), meta=('string')).compute()"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"6min 3s ± 6.64 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.map_partitions(lambda ldf: ldf.apply(get_full_text, axis=1), meta=('string')).compute(scheduler='processes')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"That didn't work. It's the first time I tried Dask as I hoped that it would make better use of the high core count. I will have to find a better approach.\n",
"\n",
"But grouping is faster with Dask. For example to show which apps were used and for how many Tweets."
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"1.01 s ± 5.25 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t len(df.groupby('source').count())"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"934 ms ± 123 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t len(dask_df.groupby('source').count().compute())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Finally, I want to store some data…"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"111 ms ± 8.86 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t df[['created_at', 'id', 'text']].to_feather('perf_test.feather')"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"166 ms ± 8.99 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t df[['created_at', 'id', 'text']].to_parquet('perf_test.parquet')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"…and read it again."
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"38.7 ms ± 859 µs per loop (mean ± std. dev. of 7 runs, 10 loops each)\n"
]
}
],
"source": [
"%t pd.read_feather('perf_test.feather')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Dasking around"
]
},
{
"cell_type": "code",
"execution_count": 14,
"metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<table style=\"border: 2px solid white;\">\n",
"<tr>\n",
"<td style=\"vertical-align: top; border: 0px solid white\">\n",
"<h3 style=\"text-align: left;\">Client</h3>\n",
"<ul style=\"text-align: left; list-style: none; margin: 0; padding: 0;\">\n",
" <li><b>Scheduler: </b>tcp://127.0.0.1:44711</li>\n",
" <li><b>Dashboard: </b><a href='http://127.0.0.1:8787/status' target='_blank'>http://127.0.0.1:8787/status</a>\n",
"</ul>\n",
"</td>\n",
"<td style=\"vertical-align: top; border: 0px solid white\">\n",
"<h3 style=\"text-align: left;\">Cluster</h3>\n",
"<ul style=\"text-align: left; list-style:none; margin: 0; padding: 0;\">\n",
" <li><b>Workers: </b>12</li>\n",
" <li><b>Cores: </b>24</li>\n",
" <li><b>Memory: </b>67.44 GB</li>\n",
"</ul>\n",
"</td>\n",
"</tr>\n",
"</table>"
],
"text/plain": [
"<Client: 'tcp://127.0.0.1:44711' processes=12 threads=24, memory=67.44 GB>"
]
},
"execution_count": 14,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"import dask.dataframe as dd\n",
"from dask.distributed import Client, LocalCluster\n",
"cluster = LocalCluster(n_workers=12, threads_per_worker=2)\n",
"client = Client(cluster)\n",
"client"
]
},
{
"cell_type": "code",
"execution_count": 15,
"metadata": {},
"outputs": [],
"source": [
"dask_df = dd.from_pandas(df, npartitions=24)"
]
},
{
"cell_type": "code",
"execution_count": 16,
"metadata": {
"scrolled": true
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"35.7 s ± 949 ms per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute()"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"8min 1s ± 4.56 s per loop (mean ± std. dev. of 7 runs, 1 loop each)\n"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute(scheduler='processes')"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {},
"outputs": [],
"source": [
"dask_df = dd.from_pandas(df, npartitions=6)"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n"
]
},
{
"ename": "KilledWorker",
"evalue": "(\"('from_pandas-b2d19880245fa409754d376116c32473', 3)\", <Worker 'tcp://127.0.0.1:36947', name: 5, memory: 0, processing: 1>)",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mKilledWorker\u001b[0m Traceback (most recent call last)",
"\u001b[0;32m<ipython-input-19-a968bb31253d>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mget_ipython\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mrun_line_magic\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m't'\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m\"dask_df.apply(get_full_text, axis=1, meta=('string')).compute()\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/IPython/core/interactiveshell.py\u001b[0m in \u001b[0;36mrun_line_magic\u001b[0;34m(self, magic_name, line, _stack_depth)\u001b[0m\n\u001b[1;32m 2315\u001b[0m \u001b[0mkwargs\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'local_ns'\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0msys\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_getframe\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstack_depth\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mf_locals\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2316\u001b[0m \u001b[0;32mwith\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbuiltin_trap\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2317\u001b[0;31m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mfn\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 2318\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2319\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/IPython/core/magic.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, *args, **kwargs)\u001b[0m\n\u001b[1;32m 699\u001b[0m \u001b[0margs_list\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mmagic_params\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0;34m\" \"\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0margs\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 700\u001b[0m \u001b[0margs\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mtuple\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0margs_list\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 701\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mfn\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 702\u001b[0m \u001b[0;32mfinally\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 703\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_in_call\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mFalse\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m</home/luca/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/decorator.py:decorator-gen-60>\u001b[0m in \u001b[0;36mtimeit\u001b[0;34m(self, line, cell, local_ns)\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/IPython/core/magic.py\u001b[0m in \u001b[0;36m<lambda>\u001b[0;34m(f, *a, **k)\u001b[0m\n\u001b[1;32m 185\u001b[0m \u001b[0;31m# but it's overkill for just that one bit of state.\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 186\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mmagic_deco\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0marg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 187\u001b[0;31m \u001b[0mcall\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mlambda\u001b[0m \u001b[0mf\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0ma\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mk\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mf\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0ma\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mk\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 188\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 189\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcallable\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0marg\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/IPython/core/magics/execution.py\u001b[0m in \u001b[0;36mtimeit\u001b[0;34m(self, line, cell, local_ns)\u001b[0m\n\u001b[1;32m 1158\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mindex\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mrange\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;36m10\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1159\u001b[0m \u001b[0mnumber\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m10\u001b[0m \u001b[0;34m**\u001b[0m \u001b[0mindex\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1160\u001b[0;31m \u001b[0mtime_number\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mtimer\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtimeit\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mnumber\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1161\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mtime_number\u001b[0m \u001b[0;34m>=\u001b[0m \u001b[0;36m0.2\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1162\u001b[0m \u001b[0;32mbreak\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/IPython/core/magics/execution.py\u001b[0m in \u001b[0;36mtimeit\u001b[0;34m(self, number)\u001b[0m\n\u001b[1;32m 167\u001b[0m \u001b[0mgc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdisable\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 168\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 169\u001b[0;31m \u001b[0mtiming\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0minner\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mit\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtimer\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 170\u001b[0m \u001b[0;32mfinally\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 171\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mgcold\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m<magic-timeit>\u001b[0m in \u001b[0;36minner\u001b[0;34m(_it, _timer)\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/dask/base.py\u001b[0m in \u001b[0;36mcompute\u001b[0;34m(self, **kwargs)\u001b[0m\n\u001b[1;32m 164\u001b[0m \u001b[0mdask\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mbase\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mcompute\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 165\u001b[0m \"\"\"\n\u001b[0;32m--> 166\u001b[0;31m \u001b[0;34m(\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mcompute\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtraverse\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;32mFalse\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 167\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 168\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/dask/base.py\u001b[0m in \u001b[0;36mcompute\u001b[0;34m(*args, **kwargs)\u001b[0m\n\u001b[1;32m 435\u001b[0m \u001b[0mkeys\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0mx\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__dask_keys__\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mcollections\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 436\u001b[0m \u001b[0mpostcomputes\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0mx\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__dask_postcompute__\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mcollections\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 437\u001b[0;31m \u001b[0mresults\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mschedule\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdsk\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkeys\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 438\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mrepack\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mf\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0ma\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m(\u001b[0m\u001b[0mf\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0ma\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mzip\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mresults\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mpostcomputes\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 439\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/client.py\u001b[0m in \u001b[0;36mget\u001b[0;34m(self, dsk, keys, restrictions, loose_restrictions, resources, sync, asynchronous, direct, retries, priority, fifo_timeout, actors, **kwargs)\u001b[0m\n\u001b[1;32m 2593\u001b[0m \u001b[0mshould_rejoin\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32mFalse\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2594\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2595\u001b[0;31m \u001b[0mresults\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgather\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mpacked\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0masynchronous\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0masynchronous\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mdirect\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mdirect\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 2596\u001b[0m \u001b[0;32mfinally\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2597\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mf\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mfutures\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/client.py\u001b[0m in \u001b[0;36mgather\u001b[0;34m(self, futures, errors, direct, asynchronous)\u001b[0m\n\u001b[1;32m 1891\u001b[0m \u001b[0mdirect\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mdirect\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1892\u001b[0m \u001b[0mlocal_worker\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlocal_worker\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1893\u001b[0;31m \u001b[0masynchronous\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0masynchronous\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1894\u001b[0m )\n\u001b[1;32m 1895\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/client.py\u001b[0m in \u001b[0;36msync\u001b[0;34m(self, func, asynchronous, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[1;32m 778\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 779\u001b[0m return sync(\n\u001b[0;32m--> 780\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mloop\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mfunc\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0margs\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcallback_timeout\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mcallback_timeout\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwargs\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 781\u001b[0m )\n\u001b[1;32m 782\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/utils.py\u001b[0m in \u001b[0;36msync\u001b[0;34m(loop, func, callback_timeout, *args, **kwargs)\u001b[0m\n\u001b[1;32m 346\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0merror\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 347\u001b[0m \u001b[0mtyp\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mexc\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtb\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0merror\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 348\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mexc\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mwith_traceback\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mtb\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 349\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 350\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mresult\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/utils.py\u001b[0m in \u001b[0;36mf\u001b[0;34m()\u001b[0m\n\u001b[1;32m 330\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mcallback_timeout\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mnot\u001b[0m \u001b[0;32mNone\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 331\u001b[0m \u001b[0mfuture\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0masyncio\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mwait_for\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mfuture\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mcallback_timeout\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 332\u001b[0;31m \u001b[0mresult\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;32myield\u001b[0m \u001b[0mfuture\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 333\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mException\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mexc\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 334\u001b[0m \u001b[0merror\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0msys\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_info\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/tornado/gen.py\u001b[0m in \u001b[0;36mrun\u001b[0;34m(self)\u001b[0m\n\u001b[1;32m 733\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 734\u001b[0m \u001b[0;32mtry\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 735\u001b[0;31m \u001b[0mvalue\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mfuture\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 736\u001b[0m \u001b[0;32mexcept\u001b[0m \u001b[0mException\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 737\u001b[0m \u001b[0mexc_info\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0msys\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mexc_info\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m~/anaconda3/envs/PerformanceTest/lib/python3.7/site-packages/distributed/client.py\u001b[0m in \u001b[0;36m_gather\u001b[0;34m(self, futures, errors, direct, local_worker)\u001b[0m\n\u001b[1;32m 1750\u001b[0m \u001b[0mexc\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mCancelledError\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1751\u001b[0m \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1752\u001b[0;31m \u001b[0;32mraise\u001b[0m \u001b[0mexception\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mwith_traceback\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mtraceback\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1753\u001b[0m \u001b[0;32mraise\u001b[0m \u001b[0mexc\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1754\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0merrors\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;34m\"skip\"\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;31mKilledWorker\u001b[0m: (\"('from_pandas-b2d19880245fa409754d376116c32473', 3)\", <Worker 'tcp://127.0.0.1:36947', name: 5, memory: 0, processing: 1>)"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"dask_df = dd.from_pandas(df, npartitions=4)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Worker exceeded 95% memory budget. Restarting\n",
"distributed.nanny - WARNING - Restarting worker\n",
"distributed.nanny - WARNING - Restarting worker\n"
]
}
],
"source": [
"%t dask_df.apply(get_full_text, axis=1, meta=('string')).compute()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"cluster.close()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.4"
}
},
"nbformat": 4,
"nbformat_minor": 4
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment