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#!/usr/bin/env bash

installAndStartSolr() {
echo "Adding Solr's Upstart configuration"
useradd -r solruser
chown -R solruser:solruser /usr/hdp/current/solr/

if [ -z "$ZKHOSTS" ]; then
    echo "[ERROR] ZKHOSTS is empty. Exiting..."
    exit 1

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<Context>
    <Resources>
         <PostResources className="org.apache.catalina.webresources.DirResourceSet"          webAppMount="/WEB-INF/classes" base="${OPENCGA_INSTALLATION_DIR}/conf/hadoop" />
    </Resources>
</Context>

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RELEASE_URL=${1}
HD_INSIGHTS_SSH_DNS=${2}
HD_INSIGHTS_SSH_USER=${3}
HD_INSIGHTS_SSH_PASS=${4}

#setting up opencga VM
sudo apt-get update
sudo apt-get upgrade -y 
sudo apt-get install software-properties-common -y

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{
  "$schema": "https://schema.management.azure.com/schemas/2015-01-01/deploymentTemplate.json#",
  "contentVersion": "1.0.0.0",
  "parameters": {

    "VmSize": {
      "type": "string",
      "defaultValue": "Standard_A1",
      "allowedValues": [
        "Standard_A1",

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az group deployment create \
      --resource-group tmpCFtoARM \
      --template-file azuredeploy.json \
      --parameters @azuredeploy.parameters.json

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{
    "$schema": "https://schema.management.azure.com/schemas/2015-01-01/deploymentParameters.json#",
    "contentVersion": "1.0.0.0",
  "parameters": {
    "SSHPublicKey": {
      "reference": {
        "keyVault": {
          "id": "/subscriptions/802df257-6032-4b50-884c-XXXXX/resourceGroups/KeyVault/providers/Microsoft.KeyVault/vaults/MarcusKeyVaultWE"
        },
        "secretName": "MarcusSSHPublicKey"

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 "PublicDNS": {
      "Description": "Public DNSName of the newly created EC2 instance",
      "Value": { "Fn::GetAtt": [ "EC2Instance", "PublicDnsName" ] }
    },

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 "outputs": {
    "PublicDNS ": {
      "value": "[reference(resourceId('Microsoft.Network/publicIPAddresses',variables('VMNicPIPName'))).dnsSettings.fqdn]",
      "type": "string"
    }
  }
}

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 "PublicIP": {
      "Description": "Public IP address of the newly created EC2 instance",
      "Value": { "Fn::GetAtt": [ "EC2Instance", "PublicIp" ] }
    }
  }

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        "networkProfile": {
          "networkInterfaces": [
            {
              "id": "[resourceId('Microsoft.Network/networkInterfaces', 'VMNic')]"
            }
          ]
        }