I hereby claim:
- I am mcs07 on github.
- I am mcs07 (https://keybase.io/mcs07) on keybase.
- I have a public key whose fingerprint is 9329 8D08 E4D2 F2B6 85FB 56B0 3872 03B9 4DFC 10FD
To claim this, I am signing this object:
Matt Swain mcs07
mcs07
/ lilly.diff
Created
May 18, 2014 18:08
Patch for Lilly MedChem Rules to compile on OS X Mavericks with clang.
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| diff --git a/include/iwaray.h b/include/iwaray.h | |
| index 1b58e95..213f25a 100644 | |
| --- a/include/iwaray.h | |
| +++ b/include/iwaray.h | |
| @@ -341,7 +341,7 @@ resizable_array_p<T>::resizable_array_p (int n) | |
| template <typename T> | |
| resizable_array_p<T>::resizable_array_p (T * item) | |
| { | |
| - add (item); | |
| + this->add (item); |
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| diff --git a/makefile b/makefile | |
| index 7afcae0..533b228 100644 | |
| --- a/makefile | |
| +++ b/makefile | |
| @@ -2,13 +2,3 @@ OBJECTS =main.o SCA.o bitvector.o argv.o error.o mem_2.o label_vector.o linkedli | |
| CFLAGS = -O | |
| subset: $(OBJECTS) | |
| $(CC) $(OBJECTS) -o subset -lm | |
| - subset < Test/label_vector.tab | |
| - subset -sim 0.5 < Test/label_vector.tab |
mcs07
/ open-babel-mavericks.diff
Last active
August 29, 2015 14:07
Patch to backport upstream commit so Open Babel 2.3.2 can support libc++ on OS X 10.9+
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| From c3abbddae78e654df9322ad1020ff79dd6332946 Mon Sep 17 00:00:00 2001 | |
| From: Matt Swain <m.swain@me.com> | |
| Date: Thu, 31 Oct 2013 15:25:53 +0000 | |
| Subject: [PATCH] Detect libc++ as this is now the default in OS X Mavericks | |
| --- | |
| include/openbabel/obmolecformat.h | 7 ++++++- | |
| include/openbabel/shared_ptr.h | 12 ++++++++++-- | |
| src/ops/unique.cpp | 8 ++++++-- | |
| 3 files changed, 22 insertions(+), 5 deletions(-) |
mcs07
/ pandas_examples.ipynb
Created
September 2, 2015 21:49
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mcs07
/ gocr-libs.diff
Created
August 14, 2013 09:02
A patch for the gocr makefile so `make libs` works properly.
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| diff --git a/src/Makefile.in b/src/Makefile.in | |
| index bf4181f..883fec2 | |
| --- a/src/Makefile.in | |
| +++ b/src/Makefile.in | |
| @@ -10,7 +10,7 @@ PROGRAM = gocr$(EXEEXT) | |
| PGMASCLIB = Pgm2asc | |
| #LIBPGMASCLIB = lib$(PGMASCLIB).a | |
| # ToDo: need a better pgm2asc.h for lib users | |
| -#INCLUDEFILES = gocr.h | |
| +INCLUDEFILES = pgm2asc.h output.h list.h unicode.h gocr.h pnm.h |
mcs07
/ openbabel-parsmart.diff
Created
November 1, 2013 11:51
A patch to prevent segmentation faults in Open Babel.
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| diff --git a/src/parsmart.cpp b/src/parsmart.cpp | |
| index 120963e..22fe56e 100644 | |
| --- a/src/parsmart.cpp | |
| +++ b/src/parsmart.cpp | |
| @@ -1181,7 +1181,6 @@ namespace OpenBabel | |
| FreeAtomExpr(expr1); | |
| return (AtomExpr*)0; | |
| } | |
| - delete expr1; | |
| expr1 = BuildAtomBin(AE_ANDLO,expr1,expr2); |
mcs07
/ rdkit-mavericks.diff
Created
November 6, 2013 11:52
A patch for RDKit 2013.09.1 to compile with libc++ which is now the default in Mavericks.
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| diff --git a/Code/RDGeneral/Dict.h b/Code/RDGeneral/Dict.h | |
| index 6d368a4..6f586a8 100644 | |
| --- a/Code/RDGeneral/Dict.h | |
| +++ b/Code/RDGeneral/Dict.h | |
| @@ -32,14 +32,12 @@ | |
| //! | |
| class Dict { | |
| public: | |
| - typedef std::map<const std::string, boost::any> DataType; | |
| + typedef std::map<std::string, boost::any> DataType; |
mcs07
/ ocrad-mavericks.diff
Last active
December 30, 2015 00:39
A patch for ocrad 0.22 to compile with libc++ which is now the default in OS X Mavericks.
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| diff --git a/character_r11.cc b/character_r11.cc | |
| index 9b054e1..794e9c0 100644 | |
| --- a/character_r11.cc | |
| +++ b/character_r11.cc | |
| @@ -18,6 +18,7 @@ | |
| #include <algorithm> | |
| #include <cstdio> | |
| +#include <cstdlib> | |
| #include <vector> |
mcs07
/ indigo-el-capitan.diff
Created
January 2, 2016 16:39
Allow Indigo to compile under OS X 10.11
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| diff --git a/common/cmake/GetSystemVersion.cmake b/common/cmake/GetSystemVersion.cmake | |
| index 17615ab..794babd 100644 | |
| --- a/common/cmake/GetSystemVersion.cmake | |
| +++ b/common/cmake/GetSystemVersion.cmake | |
| @@ -27,6 +27,8 @@ elseif(APPLE) | |
| set(SUBSYSTEM_NAME "10.9") | |
| elseif(DARWIN_VERSION MATCHES 14) | |
| set(SUBSYSTEM_NAME "10.10") | |
| + elseif(DARWIN_VERSION MATCHES 15) | |
| + set(SUBSYSTEM_NAME "10.11") |
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