gistfile1.txt

$ arkpython3 ./aohcalc.py --geotiffs /maps/mwd24/tmp/test/ --taxid 22717831 --seasonality=1                         
Shark manifest:
{
    "start": "2023-11-24T12:54:35.820819+00:00",
    "end": "2023-11-24T12:54:41.391255+00:00",
    "env": {
        "user": "mwd24",
        "host": "fsark"
    },
    "inputs": [
        {
            "path": "./aohcalc.py",
            "sha": "3cc75455f96eb37c24bcead8654bed4775b93b7d"
        },
        {
            "path": "config.json",
            "sha": "680e2a8d997acb154ef61ea8f55dafbe811c7902"
        },
        {
            "path": "R/aoh/data-raw/crosswalk-lumb-cgls-data.csv",
            "sha": "24277986b898a3691f79e7b91120bfed44c672b5"
        },
        {
            "path": "/maps/mwd24/iucn-aoh/test_species_hab_elev.geojson",
            "sha": "70efa58766c55a40d730f8dfad7492a7689091d0"
        },
        {
            "path": "/maps/mwd24/iucn-aoh/lumbierres-10-5281_zenodo-5146073-v2.tif",
            "sha": "f179dad8d1031bf9e40c4071a1c800781fdbcc50"
        },
        {
            "path": "/maps/mwd24/iucn-aoh/dem-100m-esri54017.tif",
            "sha": "74b0ff59add60dc978bfa3202ce2772cccedeade"
        },
        {
            "path": "/home/mwd24/dev/iucn-aoh/.git/config",
            "sha": "575604f744686ca51036a0ac856b79d4e5b4e029"
        },
        {
            "path": "/home/mwd24/dev/iucn-aoh/.git/HEAD",
            "sha": "9f1df7eea4156be8a871c292b549b3325e425aa2"
        },
        {
            "path": "/home/mwd24/dev/iucn-aoh/.git/refs/heads/main",
            "sha": "c961c6be26a1aa971a3ff249907d006debddd973"
        }
    ],
    "outputs": [
        {
            "path": "/maps/mwd24/tmp/test/22717831_1.tif",
            "sha": "dd34da53793188ec17516f271b1dce5ba7d6c1e5"
        }
    ],
    "git": {
        "branch": "main",
        "commit": "b415260b62a62409c695e648d41831b29f29f0d5",
        "dirty": true,
        "remotes": {
            "origin": [
                "git@github.com:carboncredits/iucn-aoh.git"
            ]
        }
    },
    "uname": {
        "system": "Linux",
        "release": "6.2.0-36-generic",
        "version": "#37~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct  9 15:34:04 UTC 2",
        "machine": "x86_64",
        "processor": "x86_64"
    },
    "python": {
        "version": "3.10.12 (main, Jun 11 2023, 05:26:28) [GCC 11.4.0]",
        "packages": {
            "certifi": "2023.11.17",
            "types-pytz": "2023.3.1.1",
            "pytz": "2023.3.post1",
            "tzdata": "2023.3",
            "pip": "23.2.1",
            "packaging": "23.2",
            "attrs": "23.1.0",
            "pyarrow": "14.0.1",
            "click": "8.1.7",
            "pytest": "7.4.3",
            "isort": "5.12.0",
            "smmap": "5.0.1",
            "typing-extensions": "4.8.0",
            "gitdb": "4.0.11",
            "platformdirs": "4.0.0",
            "h3": "4.0.0b1",
            "pyproj": "3.6.1",
            "idna": "3.4",
            "charset-normalizer": "3.3.2",
            "GitPython": "3.1.40",
            "pyparsing": "3.1.1",
            "pylint": "3.0.2",
            "astroid": "3.0.1",
            "types-requests": "2.31.0.10",
            "requests": "2.31.0",
            "python-dateutil": "2.8.2",
            "affine": "2.4.0",
            "pandas-stubs": "2.1.1.230928",
            "pandas": "2.1.1",
            "urllib3": "2.1.0",
            "shapely": "2.0.2",
            "tomli": "2.0.1",
            "iniconfig": "2.0.0",
            "numpy": "1.26.0",
            "six": "1.16.0",
            "scipy": "1.11.4",
            "fiona": "1.9.5",
            "mypy": "1.7.1",
            "snuggs": "1.4.7",
            "rasterio": "1.3.9",
            "pluggy": "1.3.0",
            "exceptiongroup": "1.2.0",
            "click-plugins": "1.1.1",
            "mypy-extensions": "1.0.0",
            "geopandas": "0.14.1",
            "tomlkit": "0.12.3",
            "cligj": "0.7.2",
            "mccabe": "0.7.0",
            "yirgacheffe": "0.6.25",
            "dill": "0.3.7",
            "iucn-modlib": "0.1.2",
            "seasonality": "0.1",
            "shark": "0.0.1",
            "setuptools": "59.6.0",
            "GDAL": "3.6.4",
            "wheel": "0.37.1"
        }
    }
}