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meren/external-genomes.txt

Last active June 8, 2017 00:01
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Phylogenomic tutorial helper files
Raw
external-genomes.txt
name contigs_db_path
Bacteroides_fragilis_2334 Bacteroides_fragilis_2334.db
Bacteroides_fragilis_2346 Bacteroides_fragilis_2346.db
Bacteroides_fragilis_2347 Bacteroides_fragilis_2347.db
Escherichia_albertii_6917 Escherichia_albertii_6917.db
Escherichia_coli_6920 Escherichia_coli_6920.db
Escherichia_coli_9038 Escherichia_coli_9038.db
Prevotella_dentalis_19591 Prevotella_dentalis_19591.db
Prevotella_denticola_19594 Prevotella_denticola_19594.db
Prevotella_intermedia_19600 Prevotella_intermedia_19600.db
Salmonella_enterica_21806 Salmonella_enterica_21806.db
Salmonella_enterica_22047 Salmonella_enterica_22047.db
Salmonella_enterica_22289 Salmonella_enterica_22289.db
Raw
salmonella-genomes.txt
name contigs_db_path
S_enterica_01 Salmonella_enterica_21170.db
S_enterica_02 Salmonella_enterica_21496.db
S_enterica_03 Salmonella_enterica_21642.db
S_enterica_04 Salmonella_enterica_21805.db
S_enterica_05 Salmonella_enterica_21806.db
S_enterica_06 Salmonella_enterica_21834.db
S_enterica_07 Salmonella_enterica_22024.db
S_enterica_08 Salmonella_enterica_22047.db
S_enterica_09 Salmonella_enterica_22258.db
S_enterica_10 Salmonella_enterica_22289.db
S_enterica_11 Salmonella_enterica_24368.db
S_enterica_12 Salmonella_enterica_24443.db
Raw
view.txt
genome_id genome phylum genus
Bacteroides_fragilis_2334 B. fragilis 03 Bacteroidetes Bacteroides
Bacteroides_fragilis_2346 B. fragilis 02 Bacteroidetes Bacteroides
Bacteroides_fragilis_2347 B. fragilis 01 Bacteroidetes Bacteroides
Escherichia_albertii_6917 E. albertii Proteobacteria Escherichia
Escherichia_coli_6920 E. coli 02 Proteobacteria Escherichia
Escherichia_coli_9038 E. coli 01 Proteobacteria Escherichia
Prevotella_dentalis_19591 P. dentalis Bacteroidetes Prevotella
Prevotella_denticola_19594 P. denticola Bacteroidetes Prevotella
Prevotella_intermedia_19600 P. intermedia Bacteroidetes Prevotella
Salmonella_enterica_21806 S. enterica 01 Proteobacteria Salmonella
Salmonella_enterica_22047 S. enterica 02 Proteobacteria Salmonella
Salmonella_enterica_22289 S. enterica 03 Proteobacteria Salmonella
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