Further development in continuing here: https://github.com/MonashBioinformaticsPlatform/rocker-ultra
This is an attempt to simplify launching an RStudio server in Singularity with a single wrapper script, with managment of package directories per-version in your home directory, auto-free port finding, per-session password generation and SSH port forwarding instructions for free.
Loosely based on https://www.rocker-project.org/use/singularity/.
| idat2lumibatch <- function(filenames) { | |
| # filenames is a character vector of iDAT filenames | |
| require(illuminaio) | |
| require(lumi) | |
| idatlist = lapply(filenames,readIDAT) | |
| exprs = sapply(idatlist,function(x) { | |
| return(x$Quants$MeanBinData)}) | |
| se.exprs = sapply(idatlist,function(x) { | |
| return(x$Quants$DevBinData/sqrt(x$Quants$NumGoodBeadsBinData))}) | |
| beadNum = sapply(idatlist,function(x) { |
| ========================================== ========================================== | |
| TMUX COMMAND WINDOW (TAB) | |
| ========================================== ========================================== | |
| List tmux ls List ^b w | |
| New new -s <session> Create ^b c | |
| Attach att -t <session> Rename ^b , <name> | |
| Rename rename-session -t <old> <new> Last ^b l (lower-L) | |
| Kill kill-session -t <session> Close ^b & |
