Some things takes much less time and stress once you know the right tool. Below, there is a community edited list of software for scientists.
in General purpose text/code editors. It may be better to have a good editor for everything, than different ones for different languages, scripts, notes.
| import os | |
| from subprocess import check_call | |
| def post_save(model, os_path, contents_manager): | |
| """post-save hook for converting notebooks to .py and .html files.""" | |
| if model['type'] != 'notebook': | |
| return # only do this for notebooks | |
| d, fname = os.path.split(os_path) | |
| check_call(['jupyter', 'nbconvert', '--to', 'script', fname], cwd=d) | |
| check_call(['jupyter', 'nbconvert', '--to', 'html', fname], cwd=d) |
| #!/usr/bin/env python | |
| """ | |
| nsb_entropy.py | |
| June, 2011 written by Sungho Hong, Computational Neuroscience Unit, Okinawa Institute of | |
| Science and Technology | |
| May, 2019 updated to Python 3 by Charlie Strauss, Los Alamos National Lab | |
| This script is a python version of Mathematica functions by Christian Mendl |
| { | |
| "Envelope" : { | |
| "WARC-Header-Length" : "578", | |
| "Block-Digest" : "sha1:YHKQUSBOS4CLYFEKQDVGJ457OAPD6IJO", | |
| "Format" : "WARC", | |
| "Actual-Content-Length" : "43428", | |
| "WARC-Header-Metadata" : { | |
| "WARC-Record-ID" : "<urn:uuid:ffbfb0c0-6456-42b0-af03-3867be6fc09f>", | |
| "WARC-Warcinfo-ID" : "<urn:uuid:3169ca8e-39a6-42e9-a4e3-9f001f067bdf>", | |
| "Content-Length" : "43428", |
| from IPython.display import display, HTML | |
| display(HTML(data=""" | |
| <style> | |
| div#notebook-container { width: 95%; } | |
| div#menubar-container { width: 65%; } | |
| div#maintoolbar-container { width: 99%; } | |
| </style> | |
| """)) |
| import json | |
| import glob | |
| import os | |
| from os.path import join, basename | |
| # install this with "conda install -c conda-forge python-graphviz" | |
| import graphviz as gv | |
| # path to your conda environment | |
| path = os.environ.get('CONDA_PREFIX') | |
| if path is None: |