dpryan79

#!/usr/bin/env python
import argparse
import pyBigWig

parser = argparse.ArgumentParser(description="Convert the chromosome names of a bigWig file.")
parser.add_argument("conv", metavar="conversion.txt", help="Text file with two columns, the first a chromosome name and the second the converted chromosome name.")
parser.add_argument("input", metavar="input.bigWig", help="Input bigWig file")
parser.add_argument("output", metavar="output.bigWig", help="Output bigWig file name")
args = parser.parse_args()