Skip to content

Instantly share code, notes, and snippets.

View mimakaev's full-sized avatar

Max Imakaev mimakaev

  • Biobot Analytics
  • Boston, MA
View GitHub Profile
@mimakaev
mimakaev / polymer_repulsive_potential.ipynb
Created December 4, 2020 03:13
polychrom_repulsive_potential
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / trajectory_reporter_draft.ipynb
Last active November 4, 2020 14:02
work/Simulations/Untitled1.ipynb
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / assign_supports_2d.ipynb
Last active June 16, 2020 14:07
work/hicProjects/omicRelief/Untitled2.ipynb
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / sample_bonev.ipynb
Last active March 28, 2020 07:51
makeDistillerConfig
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / logbin_expected_demo.ipynb
Last active November 4, 2020 17:07
cooltools logbin_expected example
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / Untitled.ipynb
Created October 30, 2019 22:08
Compaction of a LEF array
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / hicSimulator.ipynb
Created October 22, 2019 22:44
Simulates Hi-C matrix from LEF position without polymer simulations
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / cooler_subtract.ipynb
Created October 11, 2019 19:13
cooler_subtract.ipynb
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / Untitled.ipynb
Last active July 11, 2019 15:43
polychrom-reporter
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mimakaev
mimakaev / firstAnalyses.ipynb
Last active October 30, 2018 17:37
bintu_replication
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.