mkitti

# coding: utf-8
# https://twitter.com/loicaroyer/status/1146173537658404864
#
# #Python Twitter Challenge
# Given a list of integers u=[a_0, ..., a_m]
# find the set of indices {i_0, ..., i_n} for that list such that the product 
# u[i_0]* ... *u[i_n] is the closest to a given integer N.
# The shortest and most #elegant solution wins. 
# (standard libs allowed)
#

mkitti

function [bg,image,binary3D] = rollingBallBackgroundViaBinary3D(image,ballRadius,smooth)
%rollingBallBackgroundViaBinary3D Calculate rolling ball background
%
% INPUT
% image      - 2D image of positive integers
% ballRadius - (optional) radius of rolling ball, default: 5
% smooth     - (optional) radius for Gaussian smoothing
%
% OUTPUT
% bg         - rolling ball estimated background

mkitti

// Rolling Ball Test via Binary 3D Landscape
// Mark Kittisopikul
// December 2019

// References
// 1. SR Sternberg. Biomedical Image Processing. IEEE Computer 1983.
//    https://doi.ieeecomputersociety.org/10.1109/MC.1983.1654163
// 2. SR Sternberg. Grayscale Morphology. CVGIP 1986
//    https://doi.org/10.1016/0734-189X(86)90004-6
// 3. R Adams. “Radial Decomposition of Discs and Spheres”.

mkitti

import StatsBase
"""
    xs,ys = samplePairs(x,y,nSamples=length(x)*length(y))
Samples a pair of values, one from x and one from y, without repetition
"""
function samplePairs(x::AbstractVector{T}, y::AbstractVector{T}; nSamples=length(x)*length(y)) where {T}
    xout = Vector{T}(undef,nSamples)
    yout = Vector{T}(undef,nSamples)
    p = length(x)*length(y)
    s = zeros(Int,nSamples)

mkitti

# Hacked toether from https://github.com/JuliaLang/julia/blob/2d5741174ce3e6a394010d2e470e4269ca54607f/stdlib/LinearAlgebra/src/lapack.jl#L1371
# http://www.netlib.org/lapack/explore-html/d6/d10/group__complex16_g_esolve_ga61e68db68886c3f80753fac87ca35a6e.html#ga61e68db68886c3f80753fac87ca35a6e

using LinearAlgebra

const liblapack = Base.liblapack_name

import LinearAlgebra.LAPACK.chklapackerror, LinearAlgebra.LAPACK.subsetrows

import ..LinearAlgebra.BLAS.@blasfunc

mkitti

"Allows for the splitting output among several AbstractDisplays"
module Tee
    import Base.Multimedia.display
    import Base.TextDisplay
    import Base: flush, close
    export TeeDisplay, display, teeDisplay, FlushingTextDisplay, flush, close
    
    """
        TeeDisplay(displays::Vector{AbstractDisplay})
        TeeDisplay(args::AbstractDisplay...) 

mkitti

"""
napari.jl

Test using PyCall.jl to invoke Napari ( http://github.com/napari ) from
the Julia language ( https://julialang.org/ ) 1.3.1

Mark Kittisopikul
January 29th, 2020
"""

mkitti

#@output Integer nFrames
//Sum_contour_lengths_by_frame_
//Mark Kittisopikul
//February 14th, 2020
//Install into Fiji.app/plugins/Scripts/Plugins/Curve Tracing/
//Companion to https://github.com/jalmar/CurveTracing

//Add up 
importClass(Packages.ij.IJ);
importClass(Packages.ij.plugin.frame.RoiManager)

mkitti

using JavaCall;
println("I threw a wish in the well ...")
JavaCall.init()
println("Hey, I just met you and this is crazy")
jls = @jimport java.lang.System
version = jcall(jls,"getProperty",JString,(JString,),"java.version")
println("Java Version: ",version)
jlm = @jimport java.lang.Math
@async begin
    println("But here's my number, so call me maybe")

mkitti

# This file is machine-generated - editing it directly is not advised

[[AbstractTrees]]
deps = ["Markdown"]
git-tree-sha1 = "86d092c2599f1f7bb01668bf8eb3412f98d61e47"
uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
version = "0.3.2"

[[Adapt]]
deps = ["LinearAlgebra"]