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October 29, 2018 13:09
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MySQL query to fetch OpenMRS ICD-10 diagnoses for Haiti
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SELECT | |
data.uuid, | |
GROUP_CONCAT(DISTINCT data.name SEPARATOR '; ') AS name, | |
data.set_name, | |
GROUP_CONCAT(DISTINCT data.code SEPARATOR '; ') AS 'Mapping' | |
FROM | |
( | |
SELECT | |
c.uuid, | |
( | |
SELECT uuid | |
FROM concept | |
WHERE concept.concept_id = concept_set.concept_set | |
) AS set_uuid, | |
cn.name, | |
cclass.name AS class, | |
map.source AS source, | |
map.code AS code, | |
( | |
SELECT name | |
FROM concept_name | |
WHERE concept_name.concept_id = concept_set.concept_set AND ((locale = 'en') AND locale_preferred = 1) | |
) AS set_name | |
FROM concept AS c | |
LEFT JOIN | |
( | |
SELECT | |
concept_class.name, | |
concept_class.concept_class_id | |
FROM concept_class | |
) AS cclass | |
ON c.class_id = cclass.concept_class_id | |
LEFT JOIN | |
( | |
SELECT | |
concept_name.concept_id, | |
CONCAT(concept_name.name, ' (', concept_name.locale, ')') AS name | |
FROM concept_name | |
WHERE ((locale = 'en') OR (locale = 'fr')) AND locale_preferred = 1 | |
) AS cn | |
ON c.concept_id = cn.concept_id | |
LEFT JOIN | |
( | |
SELECT | |
concept_reference_map.concept_id, | |
concept_reference_term.code AS code, | |
( | |
SELECT name FROM concept_reference_source | |
WHERE concept_reference_source.concept_source_id = concept_reference_term.concept_source_id | |
) AS source | |
FROM concept_reference_map | |
LEFT JOIN concept_reference_term | |
ON concept_reference_term.concept_reference_term_id = concept_reference_map.concept_reference_term_id | |
) AS map | |
ON c.concept_id = map.concept_id | |
LEFT JOIN concept_set | |
ON concept_set.concept_id = c.concept_id | |
) AS data | |
WHERE data.source = 'ICD-10-WHO' and class = 'Diagnosis' | |
GROUP BY data.uuid |
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