SDK & docker: java.net.ConnectException: Connection refused (Connection refused)

gistfile1.txt

The last packet sent successfully to the server was 0 milliseconds ago. The driver has not received any packets from the server.
  at sun.reflect.GeneratedConstructorAccessor13.newInstance(Unknown Source)
  at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
  at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
  at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1129)
  at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:358)
  at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2489)
  at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:2334)
  ... 15 more
Caused by: java.net.ConnectException: Connection refused (Connection refused)
  at java.net.PlainSocketImpl.socketConnect(Native Method)
  at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
  at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
  at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
  at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
  at java.net.Socket.connect(Socket.java:579)
  at java.net.Socket.connect(Socket.java:528)
  at java.net.Socket.<init>(Socket.java:425)
  at java.net.Socket.<init>(Socket.java:241)
  at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:256)
  at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:308)
  ... 17 more
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2669) |2016-12-15 17:35:53,064| Unable to find a runtime properties file at /usr/local/tomcat/openmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2697) |2016-12-15 17:35:53,064| Unable to find properties file: /usr/local/tomcat/.OpenMRS/openmrs-runtime.properties
WARN - InitializationFilter.verifyConnection(955) |2016-12-15 17:35:57,068| Error while checking the connection user account
com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException: Could not create connection to database server. Attempted reconnect 3 times. Giving up.
  at sun.reflect.GeneratedConstructorAccessor19.newInstance(Unknown Source)
  at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
  at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
  at com.mysql.jdbc.Util.getInstance(Util.java:386)
  at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
  at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:989)
  at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:975)
  at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:920)
  at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:2395)
  at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2316)
  at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:834)
  at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
  at sun.reflect.GeneratedConstructorAccessor17.newInstance(Unknown Source)
  at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
  at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
  at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
  at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:416)
  at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:347)
  at java.sql.DriverManager.getConnection(DriverManager.java:571)
  at java.sql.DriverManager.getConnection(DriverManager.java:215)
  at org.openmrs.web.filter.initialization.InitializationFilter.verifyConnection(InitializationFilter.java:948)
  at org.openmrs.web.filter.initialization.InitializationFilter.access$300(InitializationFilter.java:54)
  at org.openmrs.web.filter.initialization.InitializationFilter$InitializationCompletion$1.run(InitializationFilter.java:1426)
  at java.lang.Thread.run(Thread.java:745)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure