mrakitin

import os

from github import Github

token = os.getenv("GITHUB_ACCESS_TOKEN")
gh_org = os.getenv("GITHUB_ORG_UPDATE_TOPICS", "bluesky")
g = Github(token)

all_repos = {}
for repo in g.get_organization(gh_org).get_repos():

mrakitin

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-nsls2-analysis-2021-1.2.sh

set -e

umask 0002

sudo yum install mesa-libGL -y

mrakitin

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-bmm-analysis.sh

set -e

umask 0002

. /opt/conda/etc/profile.d/conda.sh

mrakitin

#!/bin/bash

# This was tested in the VirtualBox VM from
# https://slaclab.github.io/pydm-tutorial/intro.html.  `htop` and `terminator`
# were installed via 'sudo apt-get install ...'
# Documentation: https://gnome-terminator.readthedocs.io/en/latest/advancedusage.html.

terminator -e "bash -i -l <<< '. /etc/profile.d/conda.sh && conda activate tutorial && exec </dev/tty && ipython'" &

sleep 2

mrakitin

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-tomviz.sh

set -e

umask 0002

. /opt/conda/etc/profile.d/conda.sh

mrakitin

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-n2sn.sh

set -e

umask 0002

. /opt/conda/etc/profile.d/conda.sh

mrakitin

switch_proxy() {
    allowed_values=("o", "i")

    cfg_file="$HOME/.ssh/config"
    tmp_file="${cfg_file}_tmp"

    ssh_base="ssh"
    # ProxyCommand ssh -q -W %h:22 issh
    current_pattern="ProxyCommand ssh -q -W %h:22 .${ssh_base}"
    current_proxy=$(grep -e "${current_pattern}" ${cfg_file} | head -1 | tail -1 | awk '{print $NF}')

mrakitin

#!/bin/bash

# To be run as:
# $ docker run -it --rm -v $PWD:/build quay.io/condaforge/linux-anvil-comp7:latest bash /build/gen-conda-packed-env-collection-2021-1.2.sh

set -e

umask 0002

sudo yum install mesa-libGL -y

mrakitin

#!/bin/bash

mkdir /opt/conda_envs/collection-2020-2.0rc1
cd /opt/conda_envs/collection-2020-2.0rc1
wget https://conda.nsls2.bnl.gov/conda/environments/collection-2020-2.0.tar.gz
tar -xvf collection-2020-2.0.tar.gz
conda activate $PWD
conda-unpack

mrakitin

$ conda create -p /opt/conda_envs/analysis-2019-3.0.1-ml --clone analysis-2019-3.0.1-chx
$ conda activate /opt/conda_envs/analysis-2019-3.0.1-ml
$ pip install photutils[all] --upgrade
$ pip install astropy --upgrade
$ pip install dask[complete] --upgrade
$ pip install joblib --upgrade
$ chgrp -Rv xpcsml /opt/conda_envs/analysis-2019-3.0.1-ml/
$ chmod -Rv g+rwXs /opt/conda_envs/analysis-2019-3.0.1-ml/