SOHAIL muhammadsohailraza
muhammadsohailraza
/ Sample.vcf
Last active
August 6, 2017 07:08
Question: Switch the position of REF/ALT alleles based on AA (ancestral allele) annotations in VCF
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| ##fileformat=VCFv4.2 | |
| ##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location"> | |
| ##FILTER=<ID=LowQual,Description="Low quality"> | |
| ##FILTER=<ID=VQSRTrancheINDEL99.00to99.90,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -4.0415 <= x < -0.3987"> | |
| ##FILTER=<ID=VQSRTrancheINDEL99.90to100.00+,Description="Truth sensitivity tranche level for INDEL model at VQS Lod < -39528.47"> | |
| ##FILTER=<ID=VQSRTrancheINDEL99.90to100.00,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -39528.47 <= x < -4.0415"> | |
| ##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -240139.7406"> | |
| ##FILTER=<ID=VQSRTrancheSNP99.90to100.00,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -240139.7406 <= x < -8.9721"> | |
| ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> | |
| ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate |