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@mw55309
Created May 14, 2021 06:26
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Output:
```
run at 2021-05-13 20:37:49.539609
run at 2021-05-13 20:37:51.455154
run at 2021-05-13 20:37:53.464305
run at 2021-05-13 20:37:55.362489
run at 2021-05-13 20:37:57.314623
wait at 2021-05-13 20:37:57.565849
wait at 2021-05-13 20:37:58.586121
run at 2021-05-13 20:37:59.264404
wait at 2021-05-13 20:37:59.744916
wait at 2021-05-13 20:38:00.824887
run at 2021-05-13 20:38:01.087396
wait at 2021-05-13 20:38:01.880050
run at 2021-05-13 20:38:03.019408
run at 2021-05-13 20:38:04.931505
run at 2021-05-13 20:38:06.848144
run at 2021-05-13 20:38:08.652434
run at 2021-05-13 20:38:10.517564
run at 2021-05-13 20:38:12.420716
wait at 2021-05-13 20:38:12.913098
wait at 2021-05-13 20:38:13.949236
run at 2021-05-13 20:38:14.265843
wait at 2021-05-13 20:38:15.047552
run at 2021-05-13 20:38:16.016130
wait at 2021-05-13 20:38:16.071592
wait at 2021-05-13 20:38:17.102090
run at 2021-05-13 20:38:17.916955
wait at 2021-05-13 20:38:18.111989
wait at 2021-05-13 20:38:19.128092
run at 2021-05-13 20:38:19.798337
wait at 2021-05-13 20:38:20.151679
wait at 2021-05-13 20:38:21.175237
run at 2021-05-13 20:38:21.638235
wait at 2021-05-13 20:38:22.191422
wait at 2021-05-13 20:38:23.280004
run at 2021-05-13 20:38:23.455187
wait at 2021-05-13 20:38:24.384636
run at 2021-05-13 20:38:25.317312
run at 2021-05-13 20:38:27.195356
run at 2021-05-13 20:38:29.005892
run at 2021-05-13 20:38:30.793287
run at 2021-05-13 20:38:32.731028
run at 2021-05-13 20:38:34.587891
wait at 2021-05-13 20:38:35.415058
run at 2021-05-13 20:38:36.408298
wait at 2021-05-13 20:38:36.478600
wait at 2021-05-13 20:38:37.506526
run at 2021-05-13 20:38:38.201874
wait at 2021-05-13 20:38:38.540698
wait at 2021-05-13 20:38:39.556040
run at 2021-05-13 20:38:39.972694
wait at 2021-05-13 20:38:40.577084
wait at 2021-05-13 20:38:41.644943
run at 2021-05-13 20:38:41.809560
wait at 2021-05-13 20:38:42.667255
run at 2021-05-13 20:38:43.665409
wait at 2021-05-13 20:38:43.692654
```
Error:
```
Exception in thread Thread-1:
Traceback (most recent call last):
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 954, in _bootstrap_inner
self.run()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/threading.py", line 892, in run
self._target(*self._args, **self._kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 926, in _wait_for_jobs
status = self._retry_request(request)
Traceback (most recent call last):
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/__init__.py", line 695, in snakemake
success = workflow.execute(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/workflow.py", line 1017, in execute
success = scheduler.schedule()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 489, in schedule
self.run(runjobs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/scheduler.py", line 500, in run
executor.run_jobs(
raise ex
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/__init__.py", line 136, in run_jobs
self.run(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 806, in run
result = self._retry_request(operation)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 889, in _retry_request
raise ex
return request.execute()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/snakemake/executors/google_lifesciences.py", line 878, in _retry_request
return request.execute()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/_helpers.py", line 134, in positional_wrapper
return wrapped(*args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute
resp, content = _retry_request(
return wrapped(*args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request
raise exception
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 920, in execute
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request
resp, content = http.request(uri, method, *args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request
resp, content = request(orig_request_method, uri, method, body,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request
return http_callable(uri, method=method, body=body, headers=headers,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1708, in request
(response, content) = self._request(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1424, in _request
(response, content) = self._conn_request(conn, request_uri, method, body, headers)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/httplib2/__init__.py", line 1376, in _conn_request
response = conn.getresponse()
resp, content = _retry_request(
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 1345, in getresponse
response.begin()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 222, in _retry_request
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 307, in begin
version, status, reason = self._read_status()
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/http/client.py", line 268, in _read_status
line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/socket.py", line 704, in readinto
return self._sock.recv_into(b)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1241, in recv_into
return self.read(nbytes, buffer)
raise exception
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/ssl.py", line 1099, in read
return self._sslobj.read(len, buffer)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/googleapiclient/http.py", line 191, in _retry_request
ssl.SSLError: [SSL: WRONG_VERSION_NUMBER] wrong version number (_ssl.c:2627)
resp, content = http.request(uri, method, *args, **kwargs)
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 173, in new_request
resp, content = request(orig_request_method, uri, method, body,
File "/home/mwatson9/miniconda3/envs/snakemake_pure/lib/python3.9/site-packages/oauth2client/transport.py", line 280, in request
```
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