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mwoodbri/test.R Secret

Last active August 6, 2020 12:40
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test.pbs.sh
#PBS -l walltime=00:30:00,select=1:ncpus=1:mem=1g
source ~/anaconda3/etc/profile.d/conda.sh
#conda create -n test python=3 umap-learn r-reticulate r-seurat
cd $PBS_O_WORKDIR
conda run -n test Rscript test.R
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test.R
library(Seurat)
lung_so <- readRDS("pbmc_tutorial.RDS")
lung_so <- RunUMAP(lung_so, dims = 1:10, umap.method = "umap-learn", min.dist = 0.75)
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