[ Launch: sin waves ] dddd6a6a3299db795509 by nachocab See Previous Inlet [ Gist ]
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Sender: LSF System <lsf@node1667> | |
Subject: Job 2941808: <to_bam_pbmc_08_12> Exited | |
Job <to_bam_pbmc_08_12> was submitted from host <tin> by user <icaballe> in cluster <cromwell>. | |
Job was executed on host(s) <node1667>, in queue <hour>, as user <icaballe> in cluster <cromwell>. | |
</home/unix/icaballe> was used as the home directory. | |
</idi/sabeti-data/nacho/ebola_pbmc2> was used as the working directory. | |
Started at Tue Nov 18 20:00:26 2014 | |
Results reported at Tue Nov 18 21:48:17 2014 |
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<!DOCTYPE html> | |
<html> | |
<head> | |
<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> | |
<base target="_blank"> <!-- open all links on a new tab --> | |
<!-- <script src="bower_components/d3/d3.js"></script> --> | |
<script src="http://d3js.org/d3.v3.min.js"></script> | |
<style> | |
body{ |
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an |
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<!DOCTYPE html> | |
<html> | |
<head> | |
<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> | |
<base target="_blank"> <!-- open all links on a new tab --> | |
<!-- <script src="bower_components/d3/d3.js"></script> --> | |
<script src="http://d3js.org/d3.v3.min.js"></script> | |
<style> | |
body{ |
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<!DOCTYPE html> | |
<html> | |
<head> | |
<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> | |
<base target="_blank"> <!-- open all links on a new tab --> | |
<script src="bower_components/d3/d3.js"></script> | |
<style> | |
body{ | |
font-size: 20px; |
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data <- structure(list(gene = structure(c(1L, 2L, 3L, 4L, 5L, 6L, 7L, | |
8L, 9L, 10L, 11L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 19L, 20L, | |
21L, 22L, 23L, 24L, 25L, 26L, 27L, 28L, 29L, 30L, 31L, 32L, 33L, | |
34L, 35L, 36L, 37L, 38L, 39L, 40L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, | |
8L, 9L, 10L, 11L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 19L, 20L, | |
21L, 22L, 23L, 24L, 25L, 26L, 27L, 28L, 29L, 30L, 31L, 32L, 33L, | |
34L, 35L, 36L, 37L, 38L, 39L, 40L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, | |
8L, 9L, 10L, 11L, 12L, 13L, 14L, 15L, 16L, 17L, 18L, 19L, 20L, | |
21L, 22L, 23L, 24L, 25L, 26L, 27L, 28L, 29L, 30L, 31L, 32L, 33L, | |
34L, 35L, 36L, 37L, 38L, 39L, 40L, 1L, 2L, 3L, 4L, 5L, 6L, 7L, |
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$ ssh -vvv nacho@scc4.bu.edu 11/01/2013 18:59:25 GFT | |
OpenSSH_6.2p2, OSSLShim 0.9.8r 8 Dec 2011 | |
debug1: Reading configuration data /Users/nacho/.ssh/config | |
debug1: /Users/nacho/.ssh/config line 1: Applying options for * | |
debug1: Reading configuration data /etc/ssh_config | |
debug1: /etc/ssh_config line 20: Applying options for * | |
debug1: /etc/ssh_config line 53: Applying options for * | |
debug2: ssh_connect: needpriv 0 | |
debug1: Connecting to scc4.bu.edu [10.48.225.54] port 22. | |
debug1: Connection established. |
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# Create a file with the awk code | |
echo ' | |
$6 == "protein_coding" { | |
gene_counter[$10] += 1 | |
} | |
END { | |
for (gene_name in gene_counter){ | |
print gene_name, gene_counter[gene_name] | |
} |