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flameo_pipeline_trace
190206-16:01:25,220 nipype.workflow DEBUG:
Creating flat graph for workflow: l1
190206-16:01:25,236 nipype.workflow DEBUG:
expanding workflow: l1
190206-16:01:25,240 nipype.workflow DEBUG:
processing node: l1.inputnode
190206-16:01:25,242 nipype.workflow DEBUG:
processing node: l1.datasource
190206-16:01:25,244 nipype.workflow DEBUG:
processing node: l1.mask
190206-16:01:25,247 nipype.workflow DEBUG:
processing node: l1.model_grabber
190206-16:01:25,249 nipype.workflow DEBUG:
processing node: l1.modelspec
190206-16:01:25,251 nipype.workflow DEBUG:
processing node: l1.l1design
190206-16:01:25,253 nipype.workflow DEBUG:
processing node: l1.featmodel
190206-16:01:25,255 nipype.workflow DEBUG:
processing node: l1.filmgls
190206-16:01:25,257 nipype.workflow DEBUG:
processing node: l1.pass_run_data
190206-16:01:25,259 nipype.workflow DEBUG:
processing node: l1.join_run_data
190206-16:01:25,261 nipype.workflow DEBUG:
processing node: l1.group_by_contrast
190206-16:01:25,262 nipype.workflow DEBUG:
processing node: l1.fixedfx
190206-16:01:25,264 nipype.workflow DEBUG:
in: connections-> [('copes_grouped_by_contrast', 'inputspec.copes'), ('varcopes_grouped_by_contrast', 'inputspec.varcopes')]
190206-16:01:25,264 nipype.workflow DEBUG:
in: ('copes_grouped_by_contrast', 'inputspec.copes')
190206-16:01:25,268 nipype.workflow DEBUG:
in edges: l1.group_by_contrast copes_grouped_by_contrast fixedfx.inputspec copes
190206-16:01:25,271 nipype.workflow DEBUG:
disconnect(): l1.group_by_contrast->l1.fixedfx [('copes_grouped_by_contrast', 'inputspec.copes')]
190206-16:01:25,273 nipype.workflow DEBUG:
disconnect(): remove list [('copes_grouped_by_contrast', 'inputspec.copes')]
190206-16:01:25,274 nipype.workflow DEBUG:
disconnect(): removed connection ('copes_grouped_by_contrast', 'inputspec.copes')
190206-16:01:25,275 nipype.workflow DEBUG:
(l1.group_by_contrast, fixedfx.inputspec): No edge data
190206-16:01:25,276 nipype.workflow DEBUG:
(l1.group_by_contrast, fixedfx.inputspec): new edge data: {'connect': [('copes_grouped_by_contrast', 'copes')]}
190206-16:01:25,277 nipype.workflow DEBUG:
in: ('varcopes_grouped_by_contrast', 'inputspec.varcopes')
190206-16:01:25,280 nipype.workflow DEBUG:
in edges: l1.group_by_contrast varcopes_grouped_by_contrast fixedfx.inputspec varcopes
190206-16:01:25,290 nipype.workflow DEBUG:
disconnect(): l1.group_by_contrast->l1.fixedfx [('varcopes_grouped_by_contrast', 'inputspec.varcopes')]
190206-16:01:25,291 nipype.workflow DEBUG:
disconnect(): remove list [('varcopes_grouped_by_contrast', 'inputspec.varcopes')]
190206-16:01:25,292 nipype.workflow DEBUG:
disconnect(): removed connection ('varcopes_grouped_by_contrast', 'inputspec.varcopes')
190206-16:01:25,293 nipype.workflow DEBUG:
(l1.group_by_contrast, fixedfx.inputspec): Edge data exists: {'connect': [('copes_grouped_by_contrast', 'copes')]}
190206-16:01:25,294 nipype.workflow DEBUG:
(l1.group_by_contrast, fixedfx.inputspec): new edge data: {'connect': [('copes_grouped_by_contrast', 'copes'), ('varcopes_grouped_by_contrast', 'varcopes')]}
190206-16:01:25,295 nipype.workflow DEBUG:
in: connections-> [(('masks', 'pickfirst = lambda x: x[0]\n', ()), 'flameo.mask_file'), ('dof_files', 'inputspec.dof_files'), (('copes', 'def num_copes(files):\n return len(files)\n', ()), 'l2model.num_copes')]
190206-16:01:25,295 nipype.workflow DEBUG:
in: (('masks', 'pickfirst = lambda x: x[0]\n', ()), 'flameo.mask_file')
190206-16:01:25,298 nipype.workflow DEBUG:
in edges: l1.join_run_data ('masks', 'pickfirst = lambda x: x[0]\n', ()) fixedfx.flameo mask_file
190206-16:01:25,299 nipype.workflow DEBUG:
disconnect(): l1.join_run_data->l1.fixedfx [(('masks', 'pickfirst = lambda x: x[0]\n', ()), 'flameo.mask_file')]
190206-16:01:25,300 nipype.workflow DEBUG:
disconnect(): remove list [(('masks', 'pickfirst = lambda x: x[0]\n', ()), 'flameo.mask_file')]
190206-16:01:25,301 nipype.workflow DEBUG:
disconnect(): removed connection (('masks', 'pickfirst = lambda x: x[0]\n', ()), 'flameo.mask_file')
190206-16:01:25,302 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.flameo): No edge data
190206-16:01:25,303 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.flameo): new edge data: {'connect': [(('masks', 'pickfirst = lambda x: x[0]\n', ()), 'mask_file')]}
190206-16:01:25,304 nipype.workflow DEBUG:
in: ('dof_files', 'inputspec.dof_files')
190206-16:01:25,307 nipype.workflow DEBUG:
in edges: l1.join_run_data dof_files fixedfx.inputspec dof_files
190206-16:01:25,308 nipype.workflow DEBUG:
disconnect(): l1.join_run_data->l1.fixedfx [('dof_files', 'inputspec.dof_files')]
190206-16:01:25,309 nipype.workflow DEBUG:
disconnect(): remove list [('dof_files', 'inputspec.dof_files')]
190206-16:01:25,310 nipype.workflow DEBUG:
disconnect(): removed connection ('dof_files', 'inputspec.dof_files')
190206-16:01:25,310 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.inputspec): No edge data
190206-16:01:25,311 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.inputspec): new edge data: {'connect': [('dof_files', 'dof_files')]}
190206-16:01:25,314 nipype.workflow DEBUG:
in: (('copes', 'def num_copes(files):\n return len(files)\n', ()), 'l2model.num_copes')
190206-16:01:25,317 nipype.workflow DEBUG:
in edges: l1.join_run_data ('copes', 'def num_copes(files):\n return len(files)\n', ()) fixedfx.l2model num_copes
190206-16:01:25,331 nipype.workflow DEBUG:
disconnect(): l1.join_run_data->l1.fixedfx [(('copes', 'def num_copes(files):\n return len(files)\n', ()), 'l2model.num_copes')]
190206-16:01:25,332 nipype.workflow DEBUG:
disconnect(): remove list [(('copes', 'def num_copes(files):\n return len(files)\n', ()), 'l2model.num_copes')]
190206-16:01:25,332 nipype.workflow DEBUG:
disconnect(): removed connection (('copes', 'def num_copes(files):\n return len(files)\n', ()), 'l2model.num_copes')
190206-16:01:25,333 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.l2model): No edge data
190206-16:01:25,334 nipype.workflow DEBUG:
(l1.join_run_data, fixedfx.l2model): new edge data: {'connect': [(('copes', 'def num_copes(files):\n return len(files)\n', ()), 'num_copes')]}
190206-16:01:25,334 nipype.workflow DEBUG:
out: connections-> [('outputspec.res4d', 'flameo.@res4d'), ('outputspec.copes', 'flameo.@copes'), ('outputspec.varcopes', 'flameo.@varcopes'), ('outputspec.zstats', 'flameo.@zstats'), ('outputspec.tstats', 'flameo.@tstats')]
190206-16:01:25,335 nipype.workflow DEBUG:
out: ('outputspec.res4d', 'flameo.@res4d')
190206-16:01:25,339 nipype.workflow DEBUG:
out edges: fixedfx.outputspec res4d l1.datasink flameo.@res4d
190206-16:01:25,342 nipype.workflow DEBUG:
disconnect(): l1.fixedfx->l1.datasink [('outputspec.res4d', 'flameo.@res4d')]
190206-16:01:25,342 nipype.workflow DEBUG:
disconnect(): remove list [('outputspec.res4d', 'flameo.@res4d')]
190206-16:01:25,343 nipype.workflow DEBUG:
disconnect(): removed connection ('outputspec.res4d', 'flameo.@res4d')
190206-16:01:25,344 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): No edge data
190206-16:01:25,344 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): new edge data: {'connect': [('res4d', 'flameo.@res4d')]}
190206-16:01:25,345 nipype.workflow DEBUG:
out: ('outputspec.copes', 'flameo.@copes')
190206-16:01:25,349 nipype.workflow DEBUG:
out edges: fixedfx.outputspec copes l1.datasink flameo.@copes
190206-16:01:25,352 nipype.workflow DEBUG:
disconnect(): l1.fixedfx->l1.datasink [('outputspec.copes', 'flameo.@copes')]
190206-16:01:25,352 nipype.workflow DEBUG:
disconnect(): remove list [('outputspec.copes', 'flameo.@copes')]
190206-16:01:25,353 nipype.workflow DEBUG:
disconnect(): removed connection ('outputspec.copes', 'flameo.@copes')
190206-16:01:25,354 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): Edge data exists: {'connect': [('res4d', 'flameo.@res4d')]}
190206-16:01:25,354 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): new edge data: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes')]}
190206-16:01:25,368 nipype.workflow DEBUG:
out: ('outputspec.varcopes', 'flameo.@varcopes')
190206-16:01:25,372 nipype.workflow DEBUG:
out edges: fixedfx.outputspec varcopes l1.datasink flameo.@varcopes
190206-16:01:25,375 nipype.workflow DEBUG:
disconnect(): l1.fixedfx->l1.datasink [('outputspec.varcopes', 'flameo.@varcopes')]
190206-16:01:25,375 nipype.workflow DEBUG:
disconnect(): remove list [('outputspec.varcopes', 'flameo.@varcopes')]
190206-16:01:25,376 nipype.workflow DEBUG:
disconnect(): removed connection ('outputspec.varcopes', 'flameo.@varcopes')
190206-16:01:25,377 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): Edge data exists: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes')]}
190206-16:01:25,377 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): new edge data: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes'), ('varcopes', 'flameo.@varcopes')]}
190206-16:01:25,378 nipype.workflow DEBUG:
out: ('outputspec.zstats', 'flameo.@zstats')
190206-16:01:25,382 nipype.workflow DEBUG:
out edges: fixedfx.outputspec zstats l1.datasink flameo.@zstats
190206-16:01:25,384 nipype.workflow DEBUG:
disconnect(): l1.fixedfx->l1.datasink [('outputspec.zstats', 'flameo.@zstats')]
190206-16:01:25,385 nipype.workflow DEBUG:
disconnect(): remove list [('outputspec.zstats', 'flameo.@zstats')]
190206-16:01:25,385 nipype.workflow DEBUG:
disconnect(): removed connection ('outputspec.zstats', 'flameo.@zstats')
190206-16:01:25,386 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): Edge data exists: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes'), ('varcopes', 'flameo.@varcopes')]}
190206-16:01:25,387 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): new edge data: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes'), ('varcopes', 'flameo.@varcopes'), ('zstats', 'flameo.@zstats')]}
190206-16:01:25,387 nipype.workflow DEBUG:
out: ('outputspec.tstats', 'flameo.@tstats')
190206-16:01:25,392 nipype.workflow DEBUG:
out edges: fixedfx.outputspec tstats l1.datasink flameo.@tstats
190206-16:01:25,394 nipype.workflow DEBUG:
disconnect(): l1.fixedfx->l1.datasink [('outputspec.tstats', 'flameo.@tstats')]
190206-16:01:25,396 nipype.workflow DEBUG:
disconnect(): remove list [('outputspec.tstats', 'flameo.@tstats')]
190206-16:01:25,396 nipype.workflow DEBUG:
disconnect(): removed connection ('outputspec.tstats', 'flameo.@tstats')
190206-16:01:25,398 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): Edge data exists: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes'), ('varcopes', 'flameo.@varcopes'), ('zstats', 'flameo.@zstats')]}
190206-16:01:25,399 nipype.workflow DEBUG:
(fixedfx.outputspec, l1.datasink): new edge data: {'connect': [('res4d', 'flameo.@res4d'), ('copes', 'flameo.@copes'), ('varcopes', 'flameo.@varcopes'), ('zstats', 'flameo.@zstats'), ('tstats', 'flameo.@tstats')]}
190206-16:01:25,401 nipype.workflow DEBUG:
expanding workflow: l1.fixedfx
190206-16:01:25,402 nipype.workflow DEBUG:
processing node: fixedfx.l2model
190206-16:01:25,403 nipype.workflow DEBUG:
processing node: fixedfx.inputspec
190206-16:01:25,404 nipype.workflow DEBUG:
processing node: fixedfx.varcopemerge
190206-16:01:25,406 nipype.workflow DEBUG:
processing node: fixedfx.copemerge
190206-16:01:25,408 nipype.workflow DEBUG:
processing node: fixedfx.gendofvolume
190206-16:01:25,408 nipype.workflow DEBUG:
processing node: fixedfx.flameo
190206-16:01:25,410 nipype.workflow DEBUG:
processing node: fixedfx.outputspec
190206-16:01:25,411 nipype.workflow DEBUG:
finished expanding workflow: l1.fixedfx
190206-16:01:25,412 nipype.workflow DEBUG:
processing node: l1.datasink
190206-16:01:25,413 nipype.workflow DEBUG:
finished expanding workflow: l1
190206-16:01:25,414 nipype.workflow INFO:
Workflow l1 settings: ['check', 'execution', 'logging', 'monitoring']
190206-16:01:25,427 nipype.workflow DEBUG:
PE: expanding iterables
190206-16:01:25,433 nipype.workflow DEBUG:
Removed the identity node l1.pass_run_data from the graph.
190206-16:01:25,437 nipype.workflow DEBUG:
Removed the identity node l1.fixedfx.inputspec from the graph.
190206-16:01:25,439 nipype.workflow DEBUG:
Removed the identity node l1.fixedfx.outputspec from the graph.
190206-16:01:25,440 nipype.workflow DEBUG:
Detected iterable nodes [l1.inputnode]
190206-16:01:25,442 nipype.workflow DEBUG:
Expanding the iterable node l1.inputnode...
190206-16:01:25,443 nipype.workflow DEBUG:
Excised the l1.datasource -> l1.join_run_data join node in-edge.
190206-16:01:25,443 nipype.workflow DEBUG:
Excised the l1.filmgls -> l1.join_run_data join node in-edge.
190206-16:01:25,445 nipype.workflow DEBUG:
node: l1.inputnode iterables: {'run': <function _standardize_iterables.<locals>.make_field_func.<locals>.<lambda> at 0x7f2d2e0d9158>}
190206-16:01:25,446 nipype.workflow DEBUG:
('subnodes:', [l1.inputnode, l1.datasource, l1.model_grabber, l1.modelspec, l1.l1design, l1.featmodel, l1.filmgls, l1.datasink, l1.mask])
190206-16:01:25,458 nipype.workflow DEBUG:
[Node] inputnode - setting input run = 1
190206-16:01:25,458 nipype.workflow DEBUG:
Parameterization: paramstr=_run_1
190206-16:01:25,469 nipype.workflow DEBUG:
[Node] inputnode - setting input run = 2
190206-16:01:25,470 nipype.workflow DEBUG:
Parameterization: paramstr=_run_2
190206-16:01:25,472 nipype.workflow DEBUG:
The join node l1.join_run_data input l1.datasource was expanded to 2 nodes.
190206-16:01:25,473 nipype.workflow DEBUG:
The join node l1.join_run_data input l1.filmgls was expanded to 2 nodes.
190206-16:01:25,474 nipype.workflow DEBUG:
Added the l1.join_run_data join item fields {'masks': 'masksJ1', 'dof_files': 'dof_filesJ1', 'copes': 'copesJ1', 'varcopes': 'varcopesJ1'}.
190206-16:01:25,475 nipype.workflow DEBUG:
Added the l1.join_run_data join item fields {'masks': 'masksJ2', 'dof_files': 'dof_filesJ2', 'copes': 'copesJ2', 'varcopes': 'varcopesJ2'}.
190206-16:01:25,475 nipype.workflow DEBUG:
Qualified the l1.datasource -> l1.join_run_data join field masks as masksJ1.
190206-16:01:25,478 nipype.workflow DEBUG:
Connected the join node l1.join_run_data subgraph to the expanded join point l1.datasource
190206-16:01:25,478 nipype.workflow DEBUG:
Qualified the l1.datasource -> l1.join_run_data join field masks as masksJ2.
190206-16:01:25,479 nipype.workflow DEBUG:
Connected the join node l1.join_run_data subgraph to the expanded join point l1.datasource
190206-16:01:25,481 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field dof_files as dof_filesJ1.
190206-16:01:25,482 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field copes as copesJ1.
190206-16:01:25,484 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field varcopes as varcopesJ1.
190206-16:01:25,484 nipype.workflow DEBUG:
Connected the join node l1.join_run_data subgraph to the expanded join point l1.filmgls
190206-16:01:25,485 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field dof_files as dof_filesJ2.
190206-16:01:25,487 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field copes as copesJ2.
190206-16:01:25,489 nipype.workflow DEBUG:
Qualified the l1.filmgls -> l1.join_run_data join field varcopes as varcopesJ2.
190206-16:01:25,489 nipype.workflow DEBUG:
Connected the join node l1.join_run_data subgraph to the expanded join point l1.filmgls
190206-16:01:25,490 nipype.workflow DEBUG:
PE: expanding iterables ... done
190206-16:01:25,492 nipype.workflow DEBUG:
[Node] datasource - setting input subject_id = sub-04
190206-16:01:25,493 nipype.workflow DEBUG:
[Node] datasource - setting input task = tomloc
190206-16:01:25,494 nipype.workflow DEBUG:
[Node] datasource - setting input model = localizer
190206-16:01:25,495 nipype.workflow DEBUG:
[Node] datasource - setting input run = 2
190206-16:01:25,496 nipype.workflow DEBUG:
[Node] model_grabber - setting input project = SwiSt
190206-16:01:25,498 nipype.workflow DEBUG:
Removed the identity node l1.inputnode from the graph.
190206-16:01:25,498 nipype.workflow DEBUG:
[Node] datasource - setting input subject_id = sub-04
190206-16:01:25,499 nipype.workflow DEBUG:
[Node] datasource - setting input task = tomloc
190206-16:01:25,501 nipype.workflow DEBUG:
[Node] datasource - setting input model = localizer
190206-16:01:25,502 nipype.workflow DEBUG:
[Node] datasource - setting input run = 1
190206-16:01:25,502 nipype.workflow DEBUG:
[Node] model_grabber - setting input project = SwiSt
190206-16:01:25,504 nipype.workflow DEBUG:
Removed the identity node l1.inputnode from the graph.
190206-16:01:25,753 nipype.workflow DEBUG:
Performing depth first search
190206-16:01:25,823 nipype.workflow INFO:
Running serially.
190206-16:01:25,827 nipype.workflow INFO:
[Node] Setting-up "l1.datasource" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource".
190206-16:01:25,830 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:25,847 nipype.workflow DEBUG:
[Node] Hashes: [('base_directory', '/scratch/groups/hyo/SwiSt/BIDS_data/derivatives'), ('drop_blank_outputs', False), ('field_template', [('confounds_file', 'fmriprep/%s/func/*task-%s_run-%02d_desc-confounds_regressors.tsv'), ('contrasts_file', 'l1model/task-%s_model-%s.json'), ('events_file', 'l1model/%s/func/*task-%s_model-%s_run-%02d_events.tsv'), ('func', 'fmriprep/%s/func/*task-%s_run-%02d_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz'), ('mask', 'fmriprep/%s/func/*task-%s_run-%02d_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz'), ('struct', 'fmriprep/%s/anat/*space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz')]), ('model', 'localizer'), ('raise_on_empty', True), ('run', 2), ('sort_filelist', True), ('subject_id', 'sub-04'), ('task', 'tomloc'), ('template', '*'), ('template_args', [('confounds_file', [['subject_id', 'task', 'run']]), ('contrasts_file', [['task', 'model']]), ('events_file', [['subject_id', 'task', 'model', 'run']]), ('func', [['subject_id', 'task', 'run']]), ('mask', [['subject_id', 'task', 'run']]), ('struct', [['subject_id']])])], 9c8a1c0be31e01ce0ce7a6c81735033f, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_0x9c8a1c0be31e01ce0ce7a6c81735033f.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_0x9c8a1c0be31e01ce0ce7a6c81735033f.json']
190206-16:01:25,851 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.datasource".
190206-16:01:25,853 nipype.workflow DEBUG:
[Node] Rerunning cached, up-to-date node "l1.datasource"
190206-16:01:25,864 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource
190206-16:01:25,905 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_report
190206-16:01:25,915 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_report/report.rst"
190206-16:01:25,934 nipype.workflow INFO:
[Node] Running "datasource" ("nipype.interfaces.io.DataGrabber")
190206-16:01:26,104 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/anat/sub-04_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_desc-confounds_regressors.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-02_events.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_0x9c8a1c0be31e01ce0ce7a6c81735033f_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_node.pklz
190206-16:01:26,107 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_report
190206-16:01:26,110 nipype.workflow DEBUG:
Removing files:
190206-16:01:26,130 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,140 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/_report/report.rst"
190206-16:01:26,159 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:26,181 nipype.workflow INFO:
[Node] Finished "l1.datasource".
190206-16:01:26,184 nipype.workflow INFO:
[Node] Setting-up "l1.mask" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask".
190206-16:01:26,187 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:26,189 nipype.workflow DEBUG:
input: mask_file
190206-16:01:26,191 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,193 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,198 nipype.workflow DEBUG:
output: mask
190206-16:01:26,200 nipype.workflow DEBUG:
[Node] mask - setting input mask_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:26,204 nipype.workflow DEBUG:
input: in_file
190206-16:01:26,206 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,208 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,213 nipype.workflow DEBUG:
output: func
190206-16:01:26,215 nipype.workflow DEBUG:
[Node] mask - setting input in_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:26,239 nipype.workflow DEBUG:
[Node] Hashes: [('in_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '10d05edb810a342345a987878106923a')), ('mask_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', 'e42731d2188b4ae49edadb2bfa48935f')), ('output_type', 'NIFTI_GZ')], 4514d2af649ba157a7dd66de066b6a23, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/_0x4514d2af649ba157a7dd66de066b6a23.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/_0x4514d2af649ba157a7dd66de066b6a23.json']
190206-16:01:26,242 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.mask".
190206-16:01:26,244 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:26,288 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:26,289 nipype.workflow INFO:
[Node] Cached "l1.mask" - collecting precomputed outputs
190206-16:01:26,290 nipype.workflow INFO:
[Node] "l1.mask" found cached.
190206-16:01:26,291 nipype.workflow INFO:
[Node] Setting-up "l1.model_grabber" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber".
190206-16:01:26,292 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:26,293 nipype.workflow DEBUG:
input: contrasts_file
190206-16:01:26,294 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,295 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,303 nipype.workflow DEBUG:
output: contrasts_file
190206-16:01:26,304 nipype.workflow DEBUG:
[Node] model_grabber - setting input contrasts_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json
190206-16:01:26,304 nipype.workflow DEBUG:
input: events_file
190206-16:01:26,305 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,306 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,310 nipype.workflow DEBUG:
output: events_file
190206-16:01:26,311 nipype.workflow DEBUG:
[Node] model_grabber - setting input events_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-02_events.tsv
190206-16:01:26,312 nipype.workflow DEBUG:
input: confounds_file
190206-16:01:26,313 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,314 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,318 nipype.workflow DEBUG:
output: confounds_file
190206-16:01:26,318 nipype.workflow DEBUG:
[Node] model_grabber - setting input confounds_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_desc-confounds_regressors.tsv
190206-16:01:26,347 nipype.workflow DEBUG:
[Node] Hashes: [('confounds_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_desc-confounds_regressors.tsv', '6cc38519f76ece2479e0f3f7539ee2f3')), ('contrasts_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json', '1c1af84b432135866e3b4b148a2a0693')), ('events_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-02_events.tsv', 'd527c9e7db6708b6c28db4a097955163')), ('function_str', "def ModelGrabber(contrasts_file, events_file, confounds_file):\n\n from os import environ\n import numpy as np\n import pandas as pd\n from nipype.interfaces.base import Bunch\n from os.path import join as opj\n from json import load as loadjson\n\n # Project dir\n project = 'SwiSt'\n project_dir = opj(environ['PI_SCRATCH'], project, 'BIDS_data')\n\n ### Load data ###\n read_tsv = lambda f: pd.read_csv(opj(project_dir, f), sep='\\t', index_col=None)\n model = read_tsv(events_file)\n all_confounds = read_tsv(confounds_file)\n\n ### Confounds ###\n confound_names = ['trans_x', 'trans_y', 'trans_z', 'rot_x', 'rot_y', 'rot_z',\n 'global_signal', 'framewise_displacement',\n 'a_comp_cor_00', 'a_comp_cor_01', 'a_comp_cor_02',\n 'a_comp_cor_03', 'a_comp_cor_04', 'a_comp_cor_05']\n confounds_df = all_confounds.loc[:,confound_names]\n confounds_df.framewise_displacement = confounds_df.framewise_displacement.fillna(0)\n confounds_dict = confounds_df.to_dict('list')\n\n # Convert confounds to dictionary\n confounds = {'regressor_names': confound_names,\n 'regressors': [confounds_dict[name] for name in confound_names]}\n\n ### Model specification ###\n modelspec_dict = model.copy().rename(index=str,\n columns={'trial_type': 'conditions',\n 'onset': 'onsets',\n 'duration': 'durations',\n 'amplitude': 'amplitudes'})\n modelspec_dict = modelspec_dict.groupby('conditions').aggregate(lambda g: list(g)).reset_index().to_dict('list')\n modelspec = Bunch(**modelspec_dict)\n\n ### Contrasts ###\n with open(opj(project_dir, contrasts_file), 'r') as contrast_handle:\n contrasts = loadjson(contrast_handle)\n\n return modelspec, contrasts\n"), ('project', 'SwiSt')], e86b75f1e5ab5a302675d17a2c3a86ca, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_0xe86b75f1e5ab5a302675d17a2c3a86ca.json, []
190206-16:01:26,348 nipype.workflow DEBUG:
[Node] No hashfiles found in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber".
190206-16:01:26,349 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber
190206-16:01:26,386 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_report
190206-16:01:26,394 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_report/report.rst"
190206-16:01:26,410 nipype.workflow INFO:
[Node] Running "model_grabber" ("nipype.interfaces.utility.wrappers.Function")
190206-16:01:26,569 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_desc-confounds_regressors.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-02_events.tsv;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_0xe86b75f1e5ab5a302675d17a2c3a86ca_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_node.pklz
190206-16:01:26,572 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_report
190206-16:01:26,575 nipype.workflow DEBUG:
Removing files:
190206-16:01:26,584 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/result_model_grabber.pklz
190206-16:01:26,596 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/_report/report.rst"
190206-16:01:26,603 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:26,622 nipype.workflow INFO:
[Node] Finished "l1.model_grabber".
190206-16:01:26,625 nipype.workflow INFO:
[Node] Setting-up "l1.modelspec" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec".
190206-16:01:26,628 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:26,630 nipype.workflow DEBUG:
input: functional_runs
190206-16:01:26,632 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,635 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:26,640 nipype.workflow DEBUG:
output: func
190206-16:01:26,643 nipype.workflow DEBUG:
[Node] modelspec - setting input functional_runs = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:26,647 nipype.workflow DEBUG:
input: subject_info
190206-16:01:26,649 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/result_model_grabber.pklz
190206-16:01:26,652 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/result_model_grabber.pklz
190206-16:01:26,657 nipype.workflow DEBUG:
output: modelspec
190206-16:01:26,658 nipype.workflow DEBUG:
[Node] modelspec - setting input subject_info = Bunch(conditions=['Belief', 'Photo'], durations=[[14.0, 14.0, 14.0, 14.0, 14.0], [14.0, 14.0, 14.0, 14.0, 14.0]], onsets=[[32.029803826000716, 84.05496514300103, 110.0758707900004, 188.13858766500016, 240.180404281], [6.008914504000131, 58.050736359000425, 136.0967589659995, 162.13427194799988, 214.15952140700028]])
190206-16:01:26,678 nipype.workflow DEBUG:
[Node] Hashes: [('bids_condition_column', 'trial_type'), ('functional_runs', [('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '10d05edb810a342345a987878106923a')]), ('high_pass_filter_cutoff', '128.0000000000'), ('input_units', 'secs'), ('parameter_source', 'SPM'), ('subject_info', [Bunch(conditions=['Belief', 'Photo'], durations=[[14.0, 14.0, 14.0, 14.0, 14.0], [14.0, 14.0, 14.0, 14.0, 14.0]], onsets=[[32.029803826000716, 84.05496514300103, 110.0758707900004, 188.13858766500016, 240.180404281], [6.008914504000131, 58.050736359000425, 136.0967589659995, 162.13427194799988, 214.15952140700028]])]), ('time_repetition', '2.0000000000')], bf6a3975b1cb61786d2a8ab1a1cceae3, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_0xbf6a3975b1cb61786d2a8ab1a1cceae3.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_0x4129a3fb84dc0b6330999689227a16d7.json']
190206-16:01:26,679 nipype.workflow INFO:
[Node] Outdated cache found for "l1.modelspec".
190206-16:01:26,680 nipype.workflow DEBUG:
[Node] Old/new hashes = 4129a3fb84dc0b6330999689227a16d7/bf6a3975b1cb61786d2a8ab1a1cceae3
190206-16:01:26,709 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec
190206-16:01:26,747 nipype.workflow DEBUG:
Unable to write a particular type to the json file
190206-16:01:26,751 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_report
190206-16:01:26,760 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_report/report.rst"
190206-16:01:26,779 nipype.workflow DEBUG:
copying files to wd [execute=True, linksonly=False]
190206-16:01:26,781 nipype.utils DEBUG:
/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:26,787 nipype.utils DEBUG:
Symlinking File: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz->/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:26,793 nipype.utils DEBUG:
/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:26,803 nipype.utils DEBUG:
File: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz already exists, not overwriting, copy:0
190206-16:01:26,807 nipype.workflow INFO:
[Node] Running "modelspec" ("nipype.algorithms.modelgen.SpecifyModel")
190206-16:01:26,834 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_0xbf6a3975b1cb61786d2a8ab1a1cceae3_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_node.pklz
190206-16:01:26,836 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_report
190206-16:01:26,837 nipype.workflow DEBUG:
Removing files:
190206-16:01:26,850 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/result_modelspec.pklz
190206-16:01:26,859 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/_report/report.rst"
190206-16:01:26,869 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:26,885 nipype.workflow INFO:
[Node] Finished "l1.modelspec".
190206-16:01:26,887 nipype.workflow INFO:
[Node] Setting-up "l1.l1design" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design".
190206-16:01:26,888 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:26,888 nipype.workflow DEBUG:
input: contrasts
190206-16:01:26,889 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/result_model_grabber.pklz
190206-16:01:26,890 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/model_grabber/result_model_grabber.pklz
190206-16:01:26,894 nipype.workflow DEBUG:
output: contrasts
190206-16:01:26,895 nipype.workflow DEBUG:
[Node] l1design - setting input contrasts = [['Belief > Photo', 'T', ['Belief', 'Photo'], [1, -1]], ['Photo > Belief', 'T', ['Belief', 'Photo'], [-1, 1]], ['Task > Rest', 'T', ['Belief', 'Photo'], [1, 1]], ['Rest > All', 'T', ['Belief', 'Photo'], [-1, -1]]]
190206-16:01:26,896 nipype.workflow DEBUG:
input: session_info
190206-16:01:26,897 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/result_modelspec.pklz
190206-16:01:26,898 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/result_modelspec.pklz
190206-16:01:26,902 nipype.workflow DEBUG:
output: session_info
190206-16:01:26,903 nipype.workflow DEBUG:
[Node] l1design - setting input session_info = [{'cond': [{'duration': [14.0, 14.0, 14.0, 14.0, 14.0], 'name': 'Belief', 'onset': [32.029803826000716, 84.05496514300103, 110.0758707900004, 188.13858766500016, 240.180404281]}, {'duration': [14.0, 14.0, 14.0, 14.0, 14.0], 'name': 'Photo', 'onset': [6.008914504000131, 58.050736359000425, 136.0967589659995, 162.13427194799988, 214.15952140700028]}], 'hpf': 128.0, 'regress': [], 'scans': '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz'}]
190206-16:01:26,929 nipype.workflow DEBUG:
[Node] Hashes: [('bases', [('dgamma', [('derivs', True)])]), ('contrasts', [('Belief > Photo', 'T', ['Belief', 'Photo'], ['1.0000000000', '-1.0000000000']), ('Photo > Belief', 'T', ['Belief', 'Photo'], ['-1.0000000000', '1.0000000000']), ('Task > Rest', 'T', ['Belief', 'Photo'], ['1.0000000000', '1.0000000000']), ('Rest > All', 'T', ['Belief', 'Photo'], ['-1.0000000000', '-1.0000000000'])]), ('interscan_interval', '2.0000000000'), ('model_serial_correlations', True), ('orthogonalization', []), ('session_info', [[('cond', [[('duration', ['14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000']), ('name', 'Belief'), ('onset', ['32.0298038260', '84.0549651430', '110.0758707900', '188.1385876650', '240.1804042810'])], [('duration', ['14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000']), ('name', 'Photo'), ('onset', ['6.0089145040', '58.0507363590', '136.0967589660', '162.1342719480', '214.1595214070'])]]), ('hpf', '128.0000000000'), ('regress', []), ('scans', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/modelspec/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '10d05edb810a342345a987878106923a'))]])], 164f2c924fed742bf77e863089fe7215, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/_0x164f2c924fed742bf77e863089fe7215.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/_0x164f2c924fed742bf77e863089fe7215.json']
190206-16:01:26,931 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.l1design".
190206-16:01:26,931 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:26,973 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:26,974 nipype.workflow INFO:
[Node] Cached "l1.l1design" - collecting precomputed outputs
190206-16:01:26,975 nipype.workflow INFO:
[Node] "l1.l1design" found cached.
190206-16:01:26,976 nipype.workflow INFO:
[Node] Setting-up "l1.featmodel" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel".
190206-16:01:26,977 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:26,978 nipype.workflow DEBUG:
input: fsf_file
190206-16:01:26,978 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/result_l1design.pklz
190206-16:01:26,979 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/result_l1design.pklz
190206-16:01:26,987 nipype.workflow DEBUG:
output: fsf_files
190206-16:01:26,988 nipype.workflow DEBUG:
[Node] featmodel - setting input fsf_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/run0.fsf
190206-16:01:26,990 nipype.workflow DEBUG:
input: ev_files
190206-16:01:26,991 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/result_l1design.pklz
190206-16:01:26,992 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/result_l1design.pklz
190206-16:01:26,999 nipype.workflow DEBUG:
output: ev_files
190206-16:01:27,0 nipype.workflow DEBUG:
[Node] featmodel - setting input ev_files = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/ev_Belief_0_1.txt', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/ev_Photo_0_3.txt']
190206-16:01:27,51 nipype.workflow DEBUG:
[Node] Hashes: [('ev_files', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/ev_Belief_0_1.txt', 'fafd694554a84e55d6399419e3f5eff7'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/ev_Photo_0_3.txt', 'a1002c70d3d2afe541104012c207ad0c')]), ('fsf_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/l1design/run0.fsf', '7e199504770fb248b04fc6cae92b7f39')), ('output_type', 'NIFTI_GZ')], 82c498adcae96eec6f5ba80aec7c8a4d, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/_0x82c498adcae96eec6f5ba80aec7c8a4d.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/_0x82c498adcae96eec6f5ba80aec7c8a4d.json']
190206-16:01:27,53 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.featmodel".
190206-16:01:27,54 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:27,91 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:27,92 nipype.workflow INFO:
[Node] Cached "l1.featmodel" - collecting precomputed outputs
190206-16:01:27,93 nipype.workflow INFO:
[Node] "l1.featmodel" found cached.
190206-16:01:27,95 nipype.workflow INFO:
[Node] Setting-up "l1.filmgls" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls".
190206-16:01:27,95 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:27,96 nipype.workflow DEBUG:
input: design_file
190206-16:01:27,97 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,98 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,107 nipype.workflow DEBUG:
output: design_file
190206-16:01:27,108 nipype.workflow DEBUG:
[Node] filmgls - setting input design_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/run0.mat
190206-16:01:27,110 nipype.workflow DEBUG:
input: tcon_file
190206-16:01:27,111 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,112 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,120 nipype.workflow DEBUG:
output: con_file
190206-16:01:27,121 nipype.workflow DEBUG:
[Node] filmgls - setting input tcon_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/run0.con
190206-16:01:27,123 nipype.workflow DEBUG:
input: fcon_file
190206-16:01:27,124 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,125 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/result_featmodel.pklz
190206-16:01:27,133 nipype.workflow DEBUG:
output: fcon_file
190206-16:01:27,134 nipype.workflow DEBUG:
[Node] filmgls - setting input fcon_file = <undefined>
190206-16:01:27,135 nipype.workflow DEBUG:
input: in_file
190206-16:01:27,136 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/result_mask.pklz
190206-16:01:27,137 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/result_mask.pklz
190206-16:01:27,141 nipype.workflow DEBUG:
output: out_file
190206-16:01:27,142 nipype.workflow DEBUG:
[Node] filmgls - setting input in_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold_masked.nii.gz
190206-16:01:27,184 nipype.workflow DEBUG:
[Node] Hashes: [('autocorr_noestimate', True), ('design_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/run0.mat', '9fd74313c2a63efa88fb317d6d0bcd3d')), ('in_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/mask/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-preproc_bold_masked.nii.gz', 'f55b65d6a921b0aad9459b0c7e490152')), ('output_type', 'NIFTI_GZ'), ('results_dir', 'results'), ('tcon_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/featmodel/run0.con', 'e9b8b376c092b1b2d829068185b64713')), ('threshold', '-1000.0000000000')], 9ad1181a7dbf83b3cab471877d5b5937, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/_0x9ad1181a7dbf83b3cab471877d5b5937.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/_0x9ad1181a7dbf83b3cab471877d5b5937.json']
190206-16:01:27,185 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.filmgls".
190206-16:01:27,186 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:27,421 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:27,424 nipype.workflow INFO:
[Node] Cached "l1.filmgls" - collecting precomputed outputs
190206-16:01:27,426 nipype.workflow INFO:
[Node] "l1.filmgls" found cached.
190206-16:01:27,428 nipype.workflow INFO:
[Node] Setting-up "l1.datasource" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource".
190206-16:01:27,431 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:27,443 nipype.workflow DEBUG:
[Node] Hashes: [('base_directory', '/scratch/groups/hyo/SwiSt/BIDS_data/derivatives'), ('drop_blank_outputs', False), ('field_template', [('confounds_file', 'fmriprep/%s/func/*task-%s_run-%02d_desc-confounds_regressors.tsv'), ('contrasts_file', 'l1model/task-%s_model-%s.json'), ('events_file', 'l1model/%s/func/*task-%s_model-%s_run-%02d_events.tsv'), ('func', 'fmriprep/%s/func/*task-%s_run-%02d_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz'), ('mask', 'fmriprep/%s/func/*task-%s_run-%02d_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz'), ('struct', 'fmriprep/%s/anat/*space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz')]), ('model', 'localizer'), ('raise_on_empty', True), ('run', 1), ('sort_filelist', True), ('subject_id', 'sub-04'), ('task', 'tomloc'), ('template', '*'), ('template_args', [('confounds_file', [['subject_id', 'task', 'run']]), ('contrasts_file', [['task', 'model']]), ('events_file', [['subject_id', 'task', 'model', 'run']]), ('func', [['subject_id', 'task', 'run']]), ('mask', [['subject_id', 'task', 'run']]), ('struct', [['subject_id']])])], 599214dd32ec3d584f144e32f92d4fe0, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_0x599214dd32ec3d584f144e32f92d4fe0.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_0x599214dd32ec3d584f144e32f92d4fe0.json']
190206-16:01:27,445 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.datasource".
190206-16:01:27,446 nipype.workflow DEBUG:
[Node] Rerunning cached, up-to-date node "l1.datasource"
190206-16:01:27,461 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource
190206-16:01:27,501 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_report
190206-16:01:27,511 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_report/report.rst"
190206-16:01:27,529 nipype.workflow INFO:
[Node] Running "datasource" ("nipype.interfaces.io.DataGrabber")
190206-16:01:27,594 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/anat/sub-04_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_desc-confounds_regressors.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-01_events.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_0x599214dd32ec3d584f144e32f92d4fe0_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_node.pklz
190206-16:01:27,597 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_report
190206-16:01:27,599 nipype.workflow DEBUG:
Removing files:
190206-16:01:27,620 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,630 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/_report/report.rst"
190206-16:01:27,650 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:27,667 nipype.workflow INFO:
[Node] Finished "l1.datasource".
190206-16:01:27,670 nipype.workflow INFO:
[Node] Setting-up "l1.mask" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask".
190206-16:01:27,673 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:27,675 nipype.workflow DEBUG:
input: mask_file
190206-16:01:27,678 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,680 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,686 nipype.workflow DEBUG:
output: mask
190206-16:01:27,687 nipype.workflow DEBUG:
[Node] mask - setting input mask_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:27,692 nipype.workflow DEBUG:
input: in_file
190206-16:01:27,693 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,694 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,701 nipype.workflow DEBUG:
output: func
190206-16:01:27,703 nipype.workflow DEBUG:
[Node] mask - setting input in_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:27,729 nipype.workflow DEBUG:
[Node] Hashes: [('in_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '5510f950ebe0ab90ddaa3299aabe4336')), ('mask_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', '1c68fcdd23a1b7d3d581b3e2fd4729a7')), ('output_type', 'NIFTI_GZ')], a2fd0ca43dcf8e713b70b39c32be8db3, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/_0xa2fd0ca43dcf8e713b70b39c32be8db3.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/_0xa2fd0ca43dcf8e713b70b39c32be8db3.json']
190206-16:01:27,730 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.mask".
190206-16:01:27,731 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:27,753 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:27,755 nipype.workflow INFO:
[Node] Cached "l1.mask" - collecting precomputed outputs
190206-16:01:27,756 nipype.workflow INFO:
[Node] "l1.mask" found cached.
190206-16:01:27,757 nipype.workflow INFO:
[Node] Setting-up "l1.model_grabber" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber".
190206-16:01:27,758 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:27,758 nipype.workflow DEBUG:
input: contrasts_file
190206-16:01:27,759 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,760 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,764 nipype.workflow DEBUG:
output: contrasts_file
190206-16:01:27,766 nipype.workflow DEBUG:
[Node] model_grabber - setting input contrasts_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json
190206-16:01:27,767 nipype.workflow DEBUG:
input: events_file
190206-16:01:27,767 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,768 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,772 nipype.workflow DEBUG:
output: events_file
190206-16:01:27,773 nipype.workflow DEBUG:
[Node] model_grabber - setting input events_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-01_events.tsv
190206-16:01:27,774 nipype.workflow DEBUG:
input: confounds_file
190206-16:01:27,775 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,775 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,780 nipype.workflow DEBUG:
output: confounds_file
190206-16:01:27,781 nipype.workflow DEBUG:
[Node] model_grabber - setting input confounds_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_desc-confounds_regressors.tsv
190206-16:01:27,804 nipype.workflow DEBUG:
[Node] Directory not found "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber".
190206-16:01:27,806 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber
190206-16:01:27,809 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber
190206-16:01:27,823 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_report
190206-16:01:27,830 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_report/report.rst"
190206-16:01:27,846 nipype.workflow INFO:
[Node] Running "model_grabber" ("nipype.interfaces.utility.wrappers.Function")
190206-16:01:27,936 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_desc-confounds_regressors.tsv;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/task-tomloc_model-localizer.json;/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/l1model/sub-04/func/sub-04_task-tomloc_model-localizer_run-01_events.tsv;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_0x7106a486c7c410eb0f46758144af615f_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_node.pklz
190206-16:01:27,939 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_report
190206-16:01:27,941 nipype.workflow DEBUG:
Removing files:
190206-16:01:27,949 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/result_model_grabber.pklz
190206-16:01:27,958 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/_report/report.rst"
190206-16:01:27,967 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:27,985 nipype.workflow INFO:
[Node] Finished "l1.model_grabber".
190206-16:01:27,988 nipype.workflow INFO:
[Node] Setting-up "l1.modelspec" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec".
190206-16:01:27,990 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:27,993 nipype.workflow DEBUG:
input: functional_runs
190206-16:01:27,995 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:27,997 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:28,2 nipype.workflow DEBUG:
output: func
190206-16:01:28,5 nipype.workflow DEBUG:
[Node] modelspec - setting input functional_runs = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:28,10 nipype.workflow DEBUG:
input: subject_info
190206-16:01:28,11 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/result_model_grabber.pklz
190206-16:01:28,12 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/result_model_grabber.pklz
190206-16:01:28,19 nipype.workflow DEBUG:
output: modelspec
190206-16:01:28,21 nipype.workflow DEBUG:
[Node] modelspec - setting input subject_info = Bunch(conditions=['Belief', 'Photo'], durations=[[14.0, 14.0, 14.0, 14.0, 14.0], [14.0, 14.0, 14.0, 14.0, 14.0]], onsets=[[6.011301765998724, 84.07392662500024, 136.11583361599878, 188.1576513229993, 214.17856386600042], [32.03221099099937, 58.069786091999035, 110.09483403999913, 162.15340406599898, 240.19919188200038]])
190206-16:01:28,38 nipype.workflow DEBUG:
[Node] Hashes: [('bids_condition_column', 'trial_type'), ('functional_runs', [('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '5510f950ebe0ab90ddaa3299aabe4336')]), ('high_pass_filter_cutoff', '128.0000000000'), ('input_units', 'secs'), ('parameter_source', 'SPM'), ('subject_info', [Bunch(conditions=['Belief', 'Photo'], durations=[[14.0, 14.0, 14.0, 14.0, 14.0], [14.0, 14.0, 14.0, 14.0, 14.0]], onsets=[[6.011301765998724, 84.07392662500024, 136.11583361599878, 188.1576513229993, 214.17856386600042], [32.03221099099937, 58.069786091999035, 110.09483403999913, 162.15340406599898, 240.19919188200038]])]), ('time_repetition', '2.0000000000')], c19b963a259f8ec1d4c3f81772f715c3, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_0xc19b963a259f8ec1d4c3f81772f715c3.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_0x5109e74ea8026326747d5d68bf76a5de.json']
190206-16:01:28,39 nipype.workflow INFO:
[Node] Outdated cache found for "l1.modelspec".
190206-16:01:28,40 nipype.workflow DEBUG:
[Node] Old/new hashes = 5109e74ea8026326747d5d68bf76a5de/c19b963a259f8ec1d4c3f81772f715c3
190206-16:01:28,67 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec
190206-16:01:28,101 nipype.workflow DEBUG:
Unable to write a particular type to the json file
190206-16:01:28,104 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_report
190206-16:01:28,112 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_report/report.rst"
190206-16:01:28,131 nipype.workflow DEBUG:
copying files to wd [execute=True, linksonly=False]
190206-16:01:28,133 nipype.utils DEBUG:
/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:28,137 nipype.utils DEBUG:
Symlinking File: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz->/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:28,142 nipype.utils DEBUG:
/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
190206-16:01:28,150 nipype.utils DEBUG:
File: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz already exists, not overwriting, copy:0
190206-16:01:28,154 nipype.workflow INFO:
[Node] Running "modelspec" ("nipype.algorithms.modelgen.SpecifyModel")
190206-16:01:28,180 nipype.workflow DEBUG:
Needed files: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_0xc19b963a259f8ec1d4c3f81772f715c3_unfinished.json;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_inputs.pklz;/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_node.pklz
190206-16:01:28,181 nipype.workflow DEBUG:
Needed dirs: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_report
190206-16:01:28,182 nipype.workflow DEBUG:
Removing files:
190206-16:01:28,194 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/result_modelspec.pklz
190206-16:01:28,203 nipype.workflow DEBUG:
[Node] Writing post-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/_report/report.rst"
190206-16:01:28,212 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:28,227 nipype.workflow INFO:
[Node] Finished "l1.modelspec".
190206-16:01:28,228 nipype.workflow INFO:
[Node] Setting-up "l1.l1design" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design".
190206-16:01:28,229 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:28,230 nipype.workflow DEBUG:
input: contrasts
190206-16:01:28,231 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/result_model_grabber.pklz
190206-16:01:28,231 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/model_grabber/result_model_grabber.pklz
190206-16:01:28,235 nipype.workflow DEBUG:
output: contrasts
190206-16:01:28,236 nipype.workflow DEBUG:
[Node] l1design - setting input contrasts = [['Belief > Photo', 'T', ['Belief', 'Photo'], [1, -1]], ['Photo > Belief', 'T', ['Belief', 'Photo'], [-1, 1]], ['Task > Rest', 'T', ['Belief', 'Photo'], [1, 1]], ['Rest > All', 'T', ['Belief', 'Photo'], [-1, -1]]]
190206-16:01:28,237 nipype.workflow DEBUG:
input: session_info
190206-16:01:28,237 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/result_modelspec.pklz
190206-16:01:28,238 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/result_modelspec.pklz
190206-16:01:28,242 nipype.workflow DEBUG:
output: session_info
190206-16:01:28,243 nipype.workflow DEBUG:
[Node] l1design - setting input session_info = [{'cond': [{'duration': [14.0, 14.0, 14.0, 14.0, 14.0], 'name': 'Belief', 'onset': [6.011301765998724, 84.07392662500024, 136.11583361599878, 188.1576513229993, 214.17856386600042]}, {'duration': [14.0, 14.0, 14.0, 14.0, 14.0], 'name': 'Photo', 'onset': [32.03221099099937, 58.069786091999035, 110.09483403999913, 162.15340406599898, 240.19919188200038]}], 'hpf': 128.0, 'regress': [], 'scans': '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz'}]
190206-16:01:28,269 nipype.workflow DEBUG:
[Node] Hashes: [('bases', [('dgamma', [('derivs', True)])]), ('contrasts', [('Belief > Photo', 'T', ['Belief', 'Photo'], ['1.0000000000', '-1.0000000000']), ('Photo > Belief', 'T', ['Belief', 'Photo'], ['-1.0000000000', '1.0000000000']), ('Task > Rest', 'T', ['Belief', 'Photo'], ['1.0000000000', '1.0000000000']), ('Rest > All', 'T', ['Belief', 'Photo'], ['-1.0000000000', '-1.0000000000'])]), ('interscan_interval', '2.0000000000'), ('model_serial_correlations', True), ('orthogonalization', []), ('session_info', [[('cond', [[('duration', ['14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000']), ('name', 'Belief'), ('onset', ['6.0113017660', '84.0739266250', '136.1158336160', '188.1576513230', '214.1785638660'])], [('duration', ['14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000', '14.0000000000']), ('name', 'Photo'), ('onset', ['32.0322109910', '58.0697860920', '110.0948340400', '162.1534040660', '240.1991918820'])]]), ('hpf', '128.0000000000'), ('regress', []), ('scans', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/modelspec/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz', '5510f950ebe0ab90ddaa3299aabe4336'))]])], 202f6c96145ab793406c004dc6edd971, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/_0x202f6c96145ab793406c004dc6edd971.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/_0x202f6c96145ab793406c004dc6edd971.json']
190206-16:01:28,270 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.l1design".
190206-16:01:28,271 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:28,312 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:28,313 nipype.workflow INFO:
[Node] Cached "l1.l1design" - collecting precomputed outputs
190206-16:01:28,314 nipype.workflow INFO:
[Node] "l1.l1design" found cached.
190206-16:01:28,315 nipype.workflow INFO:
[Node] Setting-up "l1.featmodel" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel".
190206-16:01:28,316 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:28,317 nipype.workflow DEBUG:
input: fsf_file
190206-16:01:28,317 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/result_l1design.pklz
190206-16:01:28,318 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/result_l1design.pklz
190206-16:01:28,326 nipype.workflow DEBUG:
output: fsf_files
190206-16:01:28,327 nipype.workflow DEBUG:
[Node] featmodel - setting input fsf_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/run0.fsf
190206-16:01:28,329 nipype.workflow DEBUG:
input: ev_files
190206-16:01:28,330 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/result_l1design.pklz
190206-16:01:28,331 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/result_l1design.pklz
190206-16:01:28,338 nipype.workflow DEBUG:
output: ev_files
190206-16:01:28,339 nipype.workflow DEBUG:
[Node] featmodel - setting input ev_files = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/ev_Belief_0_1.txt', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/ev_Photo_0_3.txt']
190206-16:01:28,371 nipype.workflow DEBUG:
[Node] Hashes: [('ev_files', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/ev_Belief_0_1.txt', 'b080acfe32c1f112e722e470ca83726b'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/ev_Photo_0_3.txt', '05529b7b3b1e511d387c0ab307868ed5')]), ('fsf_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/l1design/run0.fsf', '815a00e8fca5c87d5e83e0c7ca769d13')), ('output_type', 'NIFTI_GZ')], 266e6d4fdacd14910a15b9f1439e3d24, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/_0x266e6d4fdacd14910a15b9f1439e3d24.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/_0x266e6d4fdacd14910a15b9f1439e3d24.json']
190206-16:01:28,372 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.featmodel".
190206-16:01:28,373 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:28,417 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:28,418 nipype.workflow INFO:
[Node] Cached "l1.featmodel" - collecting precomputed outputs
190206-16:01:28,419 nipype.workflow INFO:
[Node] "l1.featmodel" found cached.
190206-16:01:28,420 nipype.workflow INFO:
[Node] Setting-up "l1.filmgls" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls".
190206-16:01:28,421 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:28,422 nipype.workflow DEBUG:
input: design_file
190206-16:01:28,422 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,423 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,433 nipype.workflow DEBUG:
output: design_file
190206-16:01:28,434 nipype.workflow DEBUG:
[Node] filmgls - setting input design_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/run0.mat
190206-16:01:28,436 nipype.workflow DEBUG:
input: tcon_file
190206-16:01:28,437 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,438 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,447 nipype.workflow DEBUG:
output: con_file
190206-16:01:28,448 nipype.workflow DEBUG:
[Node] filmgls - setting input tcon_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/run0.con
190206-16:01:28,450 nipype.workflow DEBUG:
input: fcon_file
190206-16:01:28,451 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,452 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/result_featmodel.pklz
190206-16:01:28,461 nipype.workflow DEBUG:
output: fcon_file
190206-16:01:28,463 nipype.workflow DEBUG:
[Node] filmgls - setting input fcon_file = <undefined>
190206-16:01:28,463 nipype.workflow DEBUG:
input: in_file
190206-16:01:28,464 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/result_mask.pklz
190206-16:01:28,465 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/result_mask.pklz
190206-16:01:28,470 nipype.workflow DEBUG:
output: out_file
190206-16:01:28,471 nipype.workflow DEBUG:
[Node] filmgls - setting input in_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold_masked.nii.gz
190206-16:01:28,505 nipype.workflow DEBUG:
[Node] Hashes: [('autocorr_noestimate', True), ('design_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/run0.mat', 'ee8342021ab953139c82ccdd92ea36cc')), ('in_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/mask/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-preproc_bold_masked.nii.gz', '46e00c94db9b33ec27997979390cce8b')), ('output_type', 'NIFTI_GZ'), ('results_dir', 'results'), ('tcon_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/featmodel/run0.con', 'ef3de19acdd59f974647dfdbf1c15638')), ('threshold', '-1000.0000000000')], b93550fc7950b46a11d42b980d71167c, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/_0xb93550fc7950b46a11d42b980d71167c.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/_0xb93550fc7950b46a11d42b980d71167c.json']
190206-16:01:28,506 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.filmgls".
190206-16:01:28,507 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:28,739 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:28,742 nipype.workflow INFO:
[Node] Cached "l1.filmgls" - collecting precomputed outputs
190206-16:01:28,745 nipype.workflow INFO:
[Node] "l1.filmgls" found cached.
190206-16:01:28,748 nipype.workflow INFO:
[Node] Setting-up "l1.join_run_data" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data".
190206-16:01:28,750 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:28,753 nipype.workflow DEBUG:
input: masksJ1
190206-16:01:28,754 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:28,755 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/datasource/result_datasource.pklz
190206-16:01:28,763 nipype.workflow DEBUG:
output: mask
190206-16:01:28,764 nipype.workflow DEBUG:
[Node] join_run_data - setting input masksJ1 = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:28,765 nipype.workflow DEBUG:
input: masksJ2
190206-16:01:28,766 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:28,767 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/datasource/result_datasource.pklz
190206-16:01:28,773 nipype.workflow DEBUG:
output: mask
190206-16:01:28,775 nipype.workflow DEBUG:
[Node] join_run_data - setting input masksJ2 = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:28,776 nipype.workflow DEBUG:
input: dof_filesJ1
190206-16:01:28,777 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,778 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,815 nipype.workflow DEBUG:
output: dof_file
190206-16:01:28,816 nipype.workflow DEBUG:
[Node] join_run_data - setting input dof_filesJ1 = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/dof
190206-16:01:28,817 nipype.workflow DEBUG:
input: copesJ1
190206-16:01:28,818 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,819 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,855 nipype.workflow DEBUG:
output: copes
190206-16:01:28,856 nipype.workflow DEBUG:
[Node] join_run_data - setting input copesJ1 = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz']
190206-16:01:28,857 nipype.workflow DEBUG:
input: varcopesJ1
190206-16:01:28,858 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,859 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/result_filmgls.pklz
190206-16:01:28,894 nipype.workflow DEBUG:
output: varcopes
190206-16:01:28,896 nipype.workflow DEBUG:
[Node] join_run_data - setting input varcopesJ1 = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz']
190206-16:01:28,897 nipype.workflow DEBUG:
input: dof_filesJ2
190206-16:01:28,898 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:28,898 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:28,953 nipype.workflow DEBUG:
output: dof_file
190206-16:01:28,954 nipype.workflow DEBUG:
[Node] join_run_data - setting input dof_filesJ2 = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/dof
190206-16:01:28,955 nipype.workflow DEBUG:
input: copesJ2
190206-16:01:28,956 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:28,957 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:28,992 nipype.workflow DEBUG:
output: copes
190206-16:01:28,995 nipype.workflow DEBUG:
[Node] join_run_data - setting input copesJ2 = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz']
190206-16:01:28,996 nipype.workflow DEBUG:
input: varcopesJ2
190206-16:01:28,997 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:28,998 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/result_filmgls.pklz
190206-16:01:29,35 nipype.workflow DEBUG:
output: varcopes
190206-16:01:29,36 nipype.workflow DEBUG:
[Node] join_run_data - setting input varcopesJ2 = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz']
190206-16:01:29,186 nipype.workflow DEBUG:
[Node] Hashes: [('copesJ1', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '509dc8e06e84a8199f558e00555a37d6'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '799083d6ab12d6f742d911102c4cb9eb'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', 'e7c7823fca8c07df55b5c46b49d9961e'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '42abacf73d9c09c944ee293293e39649')]), ('copesJ2', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz', '574045c500b54176300b83c3ee31d3b4'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz', 'bfb844c723085c8de24b8c37409a6c30'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz', 'e8b47993e9646d5301008429896309a9'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz', 'aac2683f68e2197641d5fb911efe06e0')]), ('dof_filesJ1', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/dof', 'a883a7d13c0d735b2aff5d3e6d027e47')), ('dof_filesJ2', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/dof', '4033544482d2a6b2bf5319871d88aec9')), ('masksJ1', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', '1c68fcdd23a1b7d3d581b3e2fd4729a7')), ('masksJ2', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-02_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', 'e42731d2188b4ae49edadb2bfa48935f')), ('varcopesJ1', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d')]), ('varcopesJ2', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz', '07d770bf8bd43d5600710b89173363ed'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz', '07d770bf8bd43d5600710b89173363ed'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz', '20218dc4efbc5dc1b2cab83612eb0046'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz', '3d2d5c0b01fb43821f3b89f96a32ec9f')])], 0bddfe7e7089ceb2e99cba89227bbd90, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/_0x0bddfe7e7089ceb2e99cba89227bbd90.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/_0x0bddfe7e7089ceb2e99cba89227bbd90.json']
190206-16:01:29,187 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.join_run_data".
190206-16:01:29,188 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,195 nipype.workflow DEBUG:
Collated 2 inputs into the l1.join_run_data node join fields
190206-16:01:29,263 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,266 nipype.workflow INFO:
[Node] Cached "l1.join_run_data" - collecting precomputed outputs
190206-16:01:29,267 nipype.workflow INFO:
[Node] "l1.join_run_data" found cached.
190206-16:01:29,268 nipype.workflow INFO:
[Node] Setting-up "l1.fixedfx.l2model" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model".
190206-16:01:29,269 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,270 nipype.workflow DEBUG:
input: num_copes
190206-16:01:29,270 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,272 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,280 nipype.workflow DEBUG:
output: copes
190206-16:01:29,281 nipype.workflow DEBUG:
[Node] l2model - setting input num_copes = 2
190206-16:01:29,293 nipype.workflow DEBUG:
[Node] Hashes: [('num_copes', 2)], 0c657b71aee31987e194eae3d378aaef, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/_0x0c657b71aee31987e194eae3d378aaef.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/_0x0c657b71aee31987e194eae3d378aaef.json']
190206-16:01:29,294 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.fixedfx.l2model".
190206-16:01:29,295 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,339 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,341 nipype.workflow INFO:
[Node] Cached "l1.fixedfx.l2model" - collecting precomputed outputs
190206-16:01:29,342 nipype.workflow INFO:
[Node] "l1.fixedfx.l2model" found cached.
190206-16:01:29,343 nipype.workflow INFO:
[Node] Setting-up "l1.group_by_contrast" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast".
190206-16:01:29,344 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,345 nipype.workflow DEBUG:
input: copes_grouped_by_run
190206-16:01:29,345 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,346 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,350 nipype.workflow DEBUG:
output: copes
190206-16:01:29,351 nipype.workflow DEBUG:
[Node] group_by_contrast - setting input copes_grouped_by_run = [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz']]
190206-16:01:29,351 nipype.workflow DEBUG:
input: varcopes_grouped_by_run
190206-16:01:29,352 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,353 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,357 nipype.workflow DEBUG:
output: varcopes
190206-16:01:29,357 nipype.workflow DEBUG:
[Node] group_by_contrast - setting input varcopes_grouped_by_run = [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz']]
190206-16:01:29,482 nipype.workflow DEBUG:
[Node] Hashes: [('copes_grouped_by_run', [[('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '509dc8e06e84a8199f558e00555a37d6'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '799083d6ab12d6f742d911102c4cb9eb'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', 'e7c7823fca8c07df55b5c46b49d9961e'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '42abacf73d9c09c944ee293293e39649')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz', '574045c500b54176300b83c3ee31d3b4'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz', 'bfb844c723085c8de24b8c37409a6c30'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz', 'e8b47993e9646d5301008429896309a9'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz', 'aac2683f68e2197641d5fb911efe06e0')]]), ('function_str', 'def sort_filmgls_output(copes_grouped_by_run, varcopes_grouped_by_run):\n def reshape_lists(files_grouped_by_run):\n import numpy as np\n if not isinstance(files_grouped_by_run, list):\n files = [files_grouped_by_run]\n else:\n files = files_grouped_by_run\n\n if all(len(x) == len(files[0]) for x in files): n_files = len(files[0])\n\n all_files = np.array(files).flatten()\n files_grouped_by_contrast = all_files.reshape(int(len(all_files) / n_files), n_files).T.tolist()\n return files_grouped_by_contrast\n\n copes_grouped_by_contrast = reshape_lists(copes_grouped_by_run)\n varcopes_grouped_by_contrast = reshape_lists(varcopes_grouped_by_run)\n\n return copes_grouped_by_contrast, varcopes_grouped_by_contrast\n'), ('varcopes_grouped_by_run', [[('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz', '07d770bf8bd43d5600710b89173363ed'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz', '07d770bf8bd43d5600710b89173363ed'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz', '20218dc4efbc5dc1b2cab83612eb0046'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz', '3d2d5c0b01fb43821f3b89f96a32ec9f')]])], 8be96d7db3343af2b0082562d365a362, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/_0x8be96d7db3343af2b0082562d365a362.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/_0x8be96d7db3343af2b0082562d365a362.json']
190206-16:01:29,484 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.group_by_contrast".
190206-16:01:29,485 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,546 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,548 nipype.workflow INFO:
[Node] Cached "l1.group_by_contrast" - collecting precomputed outputs
190206-16:01:29,549 nipype.workflow INFO:
[Node] "l1.group_by_contrast" found cached.
190206-16:01:29,550 nipype.workflow INFO:
[Node] Setting-up "l1.fixedfx.varcopemerge" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge".
190206-16:01:29,552 nipype.workflow DEBUG:
adding multipath trait: in_files
190206-16:01:29,554 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,555 nipype.workflow DEBUG:
input: in_files
190206-16:01:29,555 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/result_group_by_contrast.pklz
190206-16:01:29,556 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/result_group_by_contrast.pklz
190206-16:01:29,564 nipype.workflow DEBUG:
output: varcopes_grouped_by_contrast
190206-16:01:29,565 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.varcopemerge) input in_files = [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz']]
190206-16:01:29,566 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.varcopemerge) input: in_files -> [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz']]
190206-16:01:29,580 nipype.workflow DEBUG:
setting hashinput in_files-> [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz']]
190206-16:01:29,677 nipype.workflow DEBUG:
[Node] Hashes: [('dimension', 't'), ('in_files', [[('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope1.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope1.nii.gz', '07d770bf8bd43d5600710b89173363ed')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope2.nii.gz', 'bca60601353a39bacc330f0b128372d8'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope2.nii.gz', '07d770bf8bd43d5600710b89173363ed')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope3.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope3.nii.gz', '20218dc4efbc5dc1b2cab83612eb0046')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/varcope4.nii.gz', '0cc26960f19f9ecb65f9e1d94c80d32d'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/varcope4.nii.gz', '3d2d5c0b01fb43821f3b89f96a32ec9f')]]), ('output_type', 'NIFTI_GZ')], 600426eab60d60f24970d162dd89334b, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/_0x600426eab60d60f24970d162dd89334b.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/_0x600426eab60d60f24970d162dd89334b.json']
190206-16:01:29,678 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.fixedfx.varcopemerge".
190206-16:01:29,679 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,719 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,721 nipype.workflow INFO:
[Node] "l1.fixedfx.varcopemerge" found cached.
190206-16:01:29,722 nipype.workflow INFO:
[Node] Setting-up "l1.fixedfx.copemerge" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge".
190206-16:01:29,724 nipype.workflow DEBUG:
adding multipath trait: in_files
190206-16:01:29,725 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,726 nipype.workflow DEBUG:
input: in_files
190206-16:01:29,727 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/result_group_by_contrast.pklz
190206-16:01:29,728 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/group_by_contrast/result_group_by_contrast.pklz
190206-16:01:29,733 nipype.workflow DEBUG:
output: copes_grouped_by_contrast
190206-16:01:29,734 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.copemerge) input in_files = [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz']]
190206-16:01:29,735 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.copemerge) input: in_files -> [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz']]
190206-16:01:29,748 nipype.workflow DEBUG:
setting hashinput in_files-> [['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz'], ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz']]
190206-16:01:29,828 nipype.workflow DEBUG:
[Node] Hashes: [('dimension', 't'), ('in_files', [[('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope1.nii.gz', '509dc8e06e84a8199f558e00555a37d6'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope1.nii.gz', '574045c500b54176300b83c3ee31d3b4')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope2.nii.gz', '799083d6ab12d6f742d911102c4cb9eb'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope2.nii.gz', 'bfb844c723085c8de24b8c37409a6c30')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope3.nii.gz', 'e7c7823fca8c07df55b5c46b49d9961e'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope3.nii.gz', 'e8b47993e9646d5301008429896309a9')], [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/cope4.nii.gz', '42abacf73d9c09c944ee293293e39649'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/cope4.nii.gz', 'aac2683f68e2197641d5fb911efe06e0')]]), ('output_type', 'NIFTI_GZ')], ac7b2eb7f2cfaf084bac5619deea9fdc, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/_0xac7b2eb7f2cfaf084bac5619deea9fdc.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/_0xac7b2eb7f2cfaf084bac5619deea9fdc.json']
190206-16:01:29,829 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.fixedfx.copemerge".
190206-16:01:29,830 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,883 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,885 nipype.workflow INFO:
[Node] "l1.fixedfx.copemerge" found cached.
190206-16:01:29,886 nipype.workflow INFO:
[Node] Setting-up "l1.fixedfx.gendofvolume" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume".
190206-16:01:29,887 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,887 nipype.workflow DEBUG:
input: cope_files
190206-16:01:29,888 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/result_copemerge.pklz
190206-16:01:29,889 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/result_copemerge.pklz
190206-16:01:29,894 nipype.workflow DEBUG:
output: merged_file
190206-16:01:29,895 nipype.workflow DEBUG:
[Node] gendofvolume - setting input cope_files = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz']
190206-16:01:29,896 nipype.workflow DEBUG:
input: dof_files
190206-16:01:29,897 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,898 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,901 nipype.workflow DEBUG:
output: dof_files
190206-16:01:29,903 nipype.workflow DEBUG:
[Node] gendofvolume - setting input dof_files = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/dof', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/dof']
190206-16:01:29,961 nipype.workflow DEBUG:
[Node] Hashes: [('cope_files', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '46cc2d6cc79bea066ffedb17126130a7'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', 'afd394efea8753cd441520102ff21368'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', 'ddc3823c932b150c4f5c37f7c8f831b3'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz', '133c124fc83ccf1ef75d19b5963a2aef')]), ('dof_files', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_1/filmgls/results/dof', 'a883a7d13c0d735b2aff5d3e6d027e47'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/_run_2/filmgls/results/dof', '4033544482d2a6b2bf5319871d88aec9')]), ('function_str', "def get_dofvolumes(dof_files, cope_files):\n import os\n import nibabel as nb\n import numpy as np\n img = nb.load(cope_files[0])\n if len(img.shape) > 3:\n out_data = np.zeros(img.shape)\n else:\n out_data = np.zeros(list(img.shape) + [1])\n for i in range(out_data.shape[-1]):\n dof = np.loadtxt(dof_files[i])\n out_data[:, :, :, i] = dof\n filename = os.path.join(os.getcwd(), 'dof_file.nii.gz')\n newimg = nb.Nifti1Image(out_data, None, img.header)\n newimg.to_filename(filename)\n return filename\n")], 13b167dcc75e0e1b718189692bfc6934, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/_0x13b167dcc75e0e1b718189692bfc6934.json, ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/_0x13b167dcc75e0e1b718189692bfc6934.json']
190206-16:01:29,962 nipype.workflow DEBUG:
[Node] Up-to-date cache found for "l1.fixedfx.gendofvolume".
190206-16:01:29,963 nipype.workflow DEBUG:
Only updating node hashes or skipping execution
190206-16:01:29,987 nipype.workflow DEBUG:
Aggregate: False
190206-16:01:29,989 nipype.workflow INFO:
[Node] Cached "l1.fixedfx.gendofvolume" - collecting precomputed outputs
190206-16:01:29,990 nipype.workflow INFO:
[Node] "l1.fixedfx.gendofvolume" found cached.
190206-16:01:29,991 nipype.workflow INFO:
[Node] Setting-up "l1.fixedfx.flameo" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo".
190206-16:01:29,992 nipype.workflow DEBUG:
adding multipath trait: cope_file
190206-16:01:29,993 nipype.workflow DEBUG:
adding multipath trait: var_cope_file
190206-16:01:29,994 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:29,995 nipype.workflow DEBUG:
input: mask_file
190206-16:01:29,996 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:29,996 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/join_run_data/result_join_run_data.pklz
190206-16:01:30,0 nipype.workflow DEBUG:
output: masks
190206-16:01:30,1 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input mask_file = /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:30,2 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: mask_file -> /scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:30,5 nipype.workflow DEBUG:
input: cope_file
190206-16:01:30,5 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/result_copemerge.pklz
190206-16:01:30,6 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/result_copemerge.pklz
190206-16:01:30,10 nipype.workflow DEBUG:
output: merged_file
190206-16:01:30,11 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input cope_file = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz']
190206-16:01:30,11 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: cope_file -> ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz']
190206-16:01:30,18 nipype.workflow DEBUG:
input: var_cope_file
190206-16:01:30,19 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/result_varcopemerge.pklz
190206-16:01:30,19 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/result_varcopemerge.pklz
190206-16:01:30,23 nipype.workflow DEBUG:
output: merged_file
190206-16:01:30,24 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input var_cope_file = ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge1/varcope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge2/varcope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge3/varcope4_merged.nii.gz']
190206-16:01:30,25 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: var_cope_file -> ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge1/varcope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge2/varcope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge3/varcope4_merged.nii.gz']
190206-16:01:30,31 nipype.workflow DEBUG:
input: dof_var_cope_file
190206-16:01:30,32 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/result_gendofvolume.pklz
190206-16:01:30,33 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/result_gendofvolume.pklz
190206-16:01:30,36 nipype.workflow DEBUG:
output: dof_volume
190206-16:01:30,36 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input dof_var_cope_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz
190206-16:01:30,37 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: dof_var_cope_file -> /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz
190206-16:01:30,39 nipype.workflow DEBUG:
input: design_file
190206-16:01:30,39 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,40 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,47 nipype.workflow DEBUG:
output: design_mat
190206-16:01:30,48 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input design_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat
190206-16:01:30,48 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: design_file -> /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat
190206-16:01:30,50 nipype.workflow DEBUG:
input: t_con_file
190206-16:01:30,51 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,51 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,60 nipype.workflow DEBUG:
output: design_con
190206-16:01:30,61 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input t_con_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con
190206-16:01:30,61 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: t_con_file -> /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con
190206-16:01:30,63 nipype.workflow DEBUG:
input: cov_split_file
190206-16:01:30,64 nipype.workflow DEBUG:
results file: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,64 nipype.utils DEBUG:
Loading pkl: /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/result_l2model.pklz
190206-16:01:30,71 nipype.workflow DEBUG:
output: design_grp
190206-16:01:30,72 nipype.workflow DEBUG:
setting nodelevel(l1.fixedfx.flameo) input cov_split_file = /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp
190206-16:01:30,73 nipype.workflow DEBUG:
setting mapnode(l1.fixedfx.flameo) input: cov_split_file -> /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp
190206-16:01:30,81 nipype.workflow DEBUG:
setting hashinput cope_file-> ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz']
190206-16:01:30,88 nipype.workflow DEBUG:
setting hashinput var_cope_file-> ['/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge1/varcope2_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge2/varcope3_merged.nii.gz', '/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge3/varcope4_merged.nii.gz']
190206-16:01:30,201 nipype.workflow DEBUG:
[Node] Hashes: [('cope_file', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '46cc2d6cc79bea066ffedb17126130a7'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge1/cope2_merged.nii.gz', 'afd394efea8753cd441520102ff21368'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge2/cope3_merged.nii.gz', 'ddc3823c932b150c4f5c37f7c8f831b3'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge3/cope4_merged.nii.gz', '133c124fc83ccf1ef75d19b5963a2aef')]), ('cov_split_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp', 'b64fd9fa740ebf866fcf87f432db8b30')), ('design_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat', '95aa6b59cd182f6362b6aeb55074e382')), ('dof_var_cope_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz', 'ab14e6c5913b5860bad789d8a5abb0f7')), ('log_dir', 'stats'), ('mask_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', '1c68fcdd23a1b7d3d581b3e2fd4729a7')), ('output_type', 'NIFTI_GZ'), ('run_mode', 'fe'), ('t_con_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con', '4c9074c23e94381d08e8ce14fecd9926')), ('var_cope_file', [('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz', 'e8f4e7263abb8440a8f66a81b4f62c34'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge1/varcope2_merged.nii.gz', 'f43445d29fbebbe59afbebabb94637bd'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge2/varcope3_merged.nii.gz', '539ebbbea7c5ccd80b11b2f7b9a915f9'), ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge3/varcope4_merged.nii.gz', '539ebbbea7c5ccd80b11b2f7b9a915f9')])], 2bcc87336ac93b4ec8169dee9b0cbf00, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/_0x2bcc87336ac93b4ec8169dee9b0cbf00.json, []
190206-16:01:30,203 nipype.workflow DEBUG:
[Node] No hashfiles found in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo".
190206-16:01:30,204 nipype.workflow DEBUG:
[MapNode] Resume - hashfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/_0x2bcc87336ac93b4ec8169dee9b0cbf00_unfinished.json
190206-16:01:30,230 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/_report/report.rst"
190206-16:01:30,343 nipype.workflow DEBUG:
setting input 0 cope_file /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz
190206-16:01:30,346 nipype.workflow DEBUG:
setting input 0 var_cope_file /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
190206-16:01:30,355 nipype.workflow INFO:
[Node] Setting-up "_flameo0" in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0".
190206-16:01:30,356 nipype.workflow DEBUG:
Setting node inputs
190206-16:01:30,414 nipype.workflow DEBUG:
[Node] Hashes: [('cope_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz', '46cc2d6cc79bea066ffedb17126130a7')), ('cov_split_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp', 'b64fd9fa740ebf866fcf87f432db8b30')), ('design_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat', '95aa6b59cd182f6362b6aeb55074e382')), ('dof_var_cope_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz', 'ab14e6c5913b5860bad789d8a5abb0f7')), ('log_dir', 'stats'), ('mask_file', ('/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz', '1c68fcdd23a1b7d3d581b3e2fd4729a7')), ('output_type', 'NIFTI_GZ'), ('run_mode', 'fe'), ('t_con_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con', '4c9074c23e94381d08e8ce14fecd9926')), ('var_cope_file', ('/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz', 'e8f4e7263abb8440a8f66a81b4f62c34'))], ffc14b651e04f1444e9bc78bb8b8513e, /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0/_0xffc14b651e04f1444e9bc78bb8b8513e.json, []
190206-16:01:30,416 nipype.workflow DEBUG:
[Node] No hashfiles found in "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0".
190206-16:01:30,417 nipype.utils DEBUG:
Removing contents of /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0
190206-16:01:30,473 nipype.utils DEBUG:
Creating directory /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0/_report
190206-16:01:30,483 nipype.workflow DEBUG:
[Node] Writing pre-exec report to "/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0/_report/report.rst"
190206-16:01:30,507 nipype.interface DEBUG:
cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz
190206-16:01:30,509 nipype.interface DEBUG:
cov_split_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp
190206-16:01:30,510 nipype.interface DEBUG:
design_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat
190206-16:01:30,511 nipype.interface DEBUG:
dof_var_cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz
190206-16:01:30,511 nipype.interface DEBUG:
log_dir_stats
190206-16:01:30,512 nipype.interface DEBUG:
mask_file_/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:30,513 nipype.interface DEBUG:
run_mode_fe
190206-16:01:30,514 nipype.interface DEBUG:
t_con_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con
190206-16:01:30,515 nipype.interface DEBUG:
var_cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
190206-16:01:30,522 nipype.workflow INFO:
[Node] Running "_flameo0" ("nipype.interfaces.fsl.model.FLAMEO"), a CommandLine Interface with command:
flameo --copefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz --covsplitfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp --designfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat --dofvarcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz --ld=stats --maskfile=/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz --runmode=fe --tcontrastsfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con --varcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
190206-16:01:30,528 nipype.interface DEBUG:
cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz
190206-16:01:30,530 nipype.interface DEBUG:
cov_split_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp
190206-16:01:30,530 nipype.interface DEBUG:
design_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat
190206-16:01:30,531 nipype.interface DEBUG:
dof_var_cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz
190206-16:01:30,532 nipype.interface DEBUG:
log_dir_stats
190206-16:01:30,533 nipype.interface DEBUG:
mask_file_/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
190206-16:01:30,534 nipype.interface DEBUG:
run_mode_fe
190206-16:01:30,535 nipype.interface DEBUG:
t_con_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con
190206-16:01:30,535 nipype.interface DEBUG:
var_cope_file_/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
190206-16:01:31,126 nipype.interface INFO:
stdout 2019-02-06T16:01:31.126081:Log directory is: stats
190206-16:01:31,142 nipype.interface INFO:
stdout 2019-02-06T16:01:31.142762:Setting up:
190206-16:01:31,527 nipype.interface INFO:
stdout 2019-02-06T16:01:31.527073:ntptsing=2.000000
190206-16:01:31,530 nipype.interface INFO:
stdout 2019-02-06T16:01:31.530201:
190206-16:01:31,532 nipype.interface INFO:
stdout 2019-02-06T16:01:31.532730:evs_group=1.000000
190206-16:01:31,535 nipype.interface INFO:
stdout 2019-02-06T16:01:31.535222:
190206-16:01:31,566 nipype.interface INFO:
stderr 2019-02-06T16:01:31.566545:Aborted
190206-16:01:31,653 nipype.workflow DEBUG:
saved results in /scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0/result__flameo0.pklz
190206-16:01:31,656 nipype.workflow WARNING:
[Node] Error on "_flameo0" (/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo/mapflow/_flameo0)
190206-16:01:31,663 nipype.workflow WARNING:
[Node] Error on "l1.fixedfx.flameo" (/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/flameo)
190206-16:01:31,671 nipype.workflow DEBUG:
Aggregate: True
190206-16:01:31,674 nipype.workflow ERROR:
Node flameo failed to run on host sh-06-36.int.
190206-16:01:31,679 nipype.workflow ERROR:
Saving crash info to /home/groups/hyo/SwiSt/3_model/crash-20190206-160131-nvelez-flameo-8ccdc2bc-a3cd-42c1-b180-78001e5747e5.pklz
Traceback (most recent call last):
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/plugins/linear.py", line 48, in run
node.run(updatehash=updatehash)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 473, in run
result = self._run_interface(execute=True)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 1253, in _run_interface
self.config['execution']['stop_on_first_crash'])))
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 1128, in _collate_results
for i, nresult, err in nodes:
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/utils.py", line 99, in nodelist_runner
result = node.run(updatehash=updatehash)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 473, in run
result = self._run_interface(execute=True)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 557, in _run_interface
return self._run_command(execute)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py", line 637, in _run_command
result = self._interface.run(cwd=outdir)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 369, in run
runtime = self._run_interface(runtime)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/fsl/model.py", line 1072, in _run_interface
return super(FLAMEO, self)._run_interface(runtime)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 752, in _run_interface
self.raise_exception(runtime)
File "/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py", line 689, in raise_exception
).format(**runtime.dictcopy()))
RuntimeError: Command:
flameo --copefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz --covsplitfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp --designfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat --dofvarcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz --ld=stats --maskfile=/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz --runmode=fe --tcontrastsfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con --varcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
Standard output:
Log directory is: stats
Setting up:
ntptsing=2.000000
evs_group=1.000000
Standard error:
Aborted
Return code: 134
---------------------------------------------------------------------------
RuntimeError Traceback (most recent call last)
<ipython-input-19-5c7911275239> in <module>
----> 1 level1_workflow.run()
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/workflows.py in run(self, plugin, plugin_args, updatehash)
597 if str2bool(self.config['execution']['create_report']):
598 self._write_report_info(self.base_dir, self.name, execgraph)
--> 599 runner.run(execgraph, updatehash=updatehash, config=self.config)
600 datestr = datetime.utcnow().strftime('%Y%m%dT%H%M%S')
601 if str2bool(self.config['execution']['write_provenance']):
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/plugins/linear.py in run(self, graph, config, updatehash)
46 if self._status_callback:
47 self._status_callback(node, 'start')
---> 48 node.run(updatehash=updatehash)
49 except:
50 endstatus = 'exception'
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in run(self, updatehash)
471
472 try:
--> 473 result = self._run_interface(execute=True)
474 except Exception:
475 logger.warning('[Node] Error on "%s" (%s)', self.fullname, outdir)
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in _run_interface(self, execute, updatehash)
1251 updatehash=updatehash,
1252 stop_first=str2bool(
-> 1253 self.config['execution']['stop_on_first_crash'])))
1254 # And store results
1255 _save_resultfile(result, cwd, self.name)
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in _collate_results(self, nodes)
1126 outputs=self.outputs)
1127 returncode = []
-> 1128 for i, nresult, err in nodes:
1129 finalresult.runtime.insert(i, None)
1130 returncode.insert(i, err)
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/utils.py in nodelist_runner(nodes, updatehash, stop_first)
97 result = None
98 try:
---> 99 result = node.run(updatehash=updatehash)
100 except Exception:
101 if stop_first:
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in run(self, updatehash)
471
472 try:
--> 473 result = self._run_interface(execute=True)
474 except Exception:
475 logger.warning('[Node] Error on "%s" (%s)', self.fullname, outdir)
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in _run_interface(self, execute, updatehash)
555 self._update_hash()
556 return self._load_results()
--> 557 return self._run_command(execute)
558
559 def _load_results(self):
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/pipeline/engine/nodes.py in _run_command(self, execute, copyfiles)
635 logger.info(message)
636 try:
--> 637 result = self._interface.run(cwd=outdir)
638 except Exception as msg:
639 result.runtime.stderr = '%s\n\n%s'.format(
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py in run(self, cwd, ignore_exception, **inputs)
367 try:
368 runtime = self._pre_run_hook(runtime)
--> 369 runtime = self._run_interface(runtime)
370 runtime = self._post_run_hook(runtime)
371 outputs = self.aggregate_outputs(runtime)
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/fsl/model.py in _run_interface(self, runtime)
1070 rmtree(os.path.join(cwd, log_dir))
1071
-> 1072 return super(FLAMEO, self)._run_interface(runtime)
1073
1074 # ohinds: 2010-04-06
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py in _run_interface(self, runtime, correct_return_codes)
750 if runtime.returncode is None or \
751 runtime.returncode not in correct_return_codes:
--> 752 self.raise_exception(runtime)
753
754 return runtime
/opt/miniconda-latest/envs/neuro/lib/python3.6/site-packages/nipype/interfaces/base/core.py in raise_exception(self, runtime)
687 ('Command:\n{cmdline}\nStandard output:\n{stdout}\n'
688 'Standard error:\n{stderr}\nReturn code: {returncode}'
--> 689 ).format(**runtime.dictcopy()))
690
691 def _get_environ(self):
RuntimeError: Command:
flameo --copefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/copemerge/mapflow/_copemerge0/cope1_merged.nii.gz --covsplitfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.grp --designfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.mat --dofvarcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/gendofvolume/dof_file.nii.gz --ld=stats --maskfile=/scratch/groups/hyo/SwiSt/BIDS_data/derivatives/fmriprep/sub-04/func/sub-04_task-tomloc_run-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz --runmode=fe --tcontrastsfile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/l2model/design.con --varcopefile=/scratch/groups/hyo/swist_cache/l1_model/task-tomloc_model-localizer_sub-04/l1/fixedfx/varcopemerge/mapflow/_varcopemerge0/varcope1_merged.nii.gz
Standard output:
Log directory is: stats
Setting up:
ntptsing=2.000000
evs_group=1.000000
Standard error:
Aborted
Return code: 134
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