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neurodroid/COVID19-test.py

Created April 28, 2020 19:13
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COVID-19 testing in France (only "laboratoire de ville")
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COVID19-test.py
"""
Sources:
https://www.data.gouv.fr/fr/datasets/donnees-relatives-aux-tests-de-depistage-de-covid-19-realises-en-laboratoire-de-ville/
"""
import pandas as pd
import matplotlib.pyplot as plt
covid_test_url = "https://www.data.gouv.fr/fr/datasets/r/b4ea7b4b-b7d1-4885-a099-71852291ff20"
covid_test_csv = pd.read_csv((covid_test_url), sep=";", index_col=1, parse_dates=True,)
df = covid_test_csv[covid_test_csv['clage_covid']=='0'].resample('D').sum()
df['ratio'] = df['nb_pos']/df['nb_test']
ax = df.plot(y='nb_test', label='no_tests')
df.plot(y='nb_pos', ax=ax, label='no_pos')
df.plot(y='ratio', secondary_y=True, ax=ax, label='ratio')
plt.show()
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