AnnotationView.coffee

## README.md

      
          Raw
        
        
              README.md
            
          
    A first implementation of the BreakDown language, a DSL for text annotation made with PEG.js.

  
## AnnotationView.coffee
window.AnnotationView = Backbone.D3View.extend
  namespace: null
  tagName: 'table'

  initialize: () ->
    @listenTo @model, 'change:annotations', @render

  render: () ->
    annotations_data = @model.get 'annotations'

    annotations = @d3el.selectAll '.annotation'
      .data annotations_data

    annotations.enter().append 'div'
      .attr
        class: 'annotation'

    annotations
      .html (d) -> "<span class='id'>#{d.id}</span> <span class='#{d.type}'>#{d.text.replace(/\n/g,'↵')}</span>"

    annotations.exit()
      .remove()


## AnnotationView.js
// Generated by CoffeeScript 1.10.0
(function() {
  window.AnnotationView = Backbone.D3View.extend({
    namespace: null,
    tagName: 'table',
    initialize: function() {
      return this.listenTo(this.model, 'change:annotations', this.render);
    },
    render: function() {
      var annotations, annotations_data;
      annotations_data = this.model.get('annotations');
      annotations = this.d3el.selectAll('.annotation').data(annotations_data);
      annotations.enter().append('div').attr({
        "class": 'annotation'
      });
      annotations.html(function(d) {
        return "<span class='id'>" + d.id + "</span> <span class='" + d.type + "'>" + (d.text.replace(/\n/g, '↵')) + "</span>";
      });
      return annotations.exit().remove();
    }
  });

}).call(this);

## AppView.coffee
window.AppView = Backbone.D3View.extend
  initialize: () ->
    # retrieve the grammar from an external file
    d3.text 'breakdown.peg.js', (grammar) =>
      editor = new Editor
        model: @model
        grammar: grammar

      @el.appendChild(editor.el)
      editor.render()


      aw = new AnnotationView
        model: @model

      @el.appendChild(aw.el)
      aw.render()


## AppView.js
// Generated by CoffeeScript 1.10.0
(function() {
  window.AppView = Backbone.D3View.extend({
    initialize: function() {
      return d3.text('breakdown.peg.js', (function(_this) {
        return function(grammar) {
          var aw, editor;
          editor = new Editor({
            model: _this.model,
            grammar: grammar
          });
          _this.el.appendChild(editor.el);
          editor.render();
          aw = new AnnotationView({
            model: _this.model
          });
          _this.el.appendChild(aw.el);
          return aw.render();
        };
      })(this));
    }
  });

}).call(this);

## backbone.d3view.js
// Backbone.D3View.js 0.3.1
// ---------------

//     (c) 2015 Adam Krebs
//     Backbone.D3View may be freely distributed under the MIT license.
//     For all details and documentation:
//     https://github.com/akre54/Backbone.D3View

(function (factory) {
  if (typeof define === 'function' && define.amd) { define(['backbone', 'd3'], factory);
  } else if (typeof exports === 'object') { module.exports = factory(require('backbone'), require('d3'));
  } else { factory(Backbone, d3); }
}(function (Backbone, d3) {

  // Cached regex to match an opening '<' of an HTML tag, possibly left-padded
  // with whitespace.
  var paddedLt = /^\s*</;

  var ElementProto = (typeof Element !== 'undefined' && Element.prototype) || {};
  var matchesSelector = ElementProto.matches ||
    ElementProto.webkitMatchesSelector ||
    ElementProto.mozMatchesSelector ||
    ElementProto.msMatchesSelector ||
    ElementProto.oMatchesSelector;

  Backbone.D3ViewMixin = {

    // A reference to the d3 selection backing the view.
    d3el: null,

    namespace: d3.ns.prefix.svg,

    $: function(selector) {
      return this.el.querySelectorAll(selector);
    },

    $$: function(selector) {
      return this.d3el.selectAll(selector);
    },

    _removeElement: function() {
      this.undelegateEvents();
      this.d3el.remove();
    },

    _createElement: function(tagName) {
      var ns = typeof this.namespace === 'function' ? this.namespace() : this.namespace;
      return ns ?
         document.createElementNS(ns, tagName) :
         document.createElement(tagName);
    },

    _setElement: function(element) {
      if (typeof element == 'string') {
        if (paddedLt.test(element)) {
          var el = document.createElement('div');
          el.innerHTML = element;
          this.el = el.firstChild;
        } else {
          this.el = document.querySelector(element);
        }
      } else {
        this.el = element;
      }

      this.d3el = d3.select(this.el);
    },

    _setAttributes: function(attributes) {
      this.d3el.attr(attributes);
    },

    // `delegate` supports two- and three-arg forms. The `selector` is optional.
    delegate: function(eventName, selector, listener) {
      if (listener === undefined) {
        listener = selector;
        selector = null;
      }

      var view = this;
      var wrapped = function(event) {
        var node = event.target,
            idx = 0,
            o = d3.event;

        d3.event = event;

        // The `event` object is stored in `d3.event` but Backbone expects it as
        // the first argument to the listener.
        if (!selector) {
          listener.call(view, d3.event, node.__data__, idx++);
          d3.event = o;
          return;
        }

        while (node && node !== view.el) {
          if (matchesSelector.call(node, selector)) {
            listener.call(view, d3.event, node.__data__, idx++);
          }
          node = node.parentNode;
        }
        d3.event = o;
      };

      var map = this._domEvents || (this._domEvents = {});
      var handlers = map[eventName] || (map[eventName] = []);
      handlers.push({selector: selector, listener: listener, wrapped: wrapped});

      this.el.addEventListener(eventName, wrapped, false);
      return this;
    },

    undelegate: function(eventName, selector, listener) {
      if (!this._domEvents || !this._domEvents[eventName]) return;

      if (typeof selector !== 'string') {
        listener = selector;
        selector = null;
      }

      var handlers = this._domEvents[eventName].slice();
      var i = handlers.length;
      while (i--) {
        var handler = handlers[i];

        var match = (listener ? handler.listener === listener : true) &&
            (selector ? handler.selector === selector : true);

        if (!match) continue;

        this.el.removeEventListener(eventName, handler.wrapped, false);
        this._domEvents[eventName].splice(i, 1);
      }
    },

    undelegateEvents: function() {
      var map = this._domEvents, el = this.el;
      if (!el || !map) return;

      Object.keys(map).forEach(function(eventName) {
        map[eventName].forEach(function(handler) {
          el.removeEventListener(eventName, handler.wrapped, false);
        });
      });

      this._domEvents = {};
      return this;
    }
  };

  Backbone.D3View = Backbone.View.extend(Backbone.D3ViewMixin);

  return Backbone.D3View;
}));

## breakdown.peg.js
{
  var plain_text_offset = 0;
  var unidentified_span_next_id = 0;
  var unidentified_spans_stack = [];
  var open_spans = {};
  var result = {
    spans: [],
    plain_text: ""
  };
}

start = (TripleSection / Body) (Newlines (TripleSection / Body))* {
  if(unidentified_spans_stack.length > 0 || Object.keys(open_spans).length > 0 ) {
    error('Span not closed at end of input.'); // FIXME better error handling: show the line of the first unclosed span
  }
  return result;
}

Body 'text body'
  = (Text / Operator)*

TripleSection 'triple section'
  = '+++' (Newlines Triples)? Newlines '+++'

Triples
  = Triple (Newlines Triple)*

Triple
  = Subject Spaces Predicate Spaces Object

Subject = Id
Predicate = (!(Spaces) .)+
Object = (!(Newlines) .)+

Operator
  = SpanOpen / SpanClose

SpanOpen
  = id:SpanOpenCode {
    if(id === "") {
      // store unidentified spans in stack
      unidentified_spans_stack.push({
        type: 'span',
        start: plain_text_offset,
        code_location: location()
      });
    }
    else {
      // store identified spans in an index
      open_spans[id] = {
        type: 'span',
        id: id,
        start: plain_text_offset,
        code_location: location()
      };
    }
  }

SpanClose
  = id:SpanCloseCode {
    var span;
    if(id in open_spans) {
      // span found in index: move it to results
      span = open_spans[id];
      delete open_spans[id];
    }
    else {
      if(unidentified_spans_stack.length === 0) {
        error('Trying to close a span without opening it.');
      }
      else {
        // span found in stack: move it to results
        span = unidentified_spans_stack.pop();

        // give unidentified spans an ID (underscore as first character is not allowed by syntax)
        if(id === '') {
          id = '_'+unidentified_span_next_id;
          unidentified_span_next_id += 1;
        }
        span.id = id;
      }
    }

    span.end = plain_text_offset;
    span.text = result.plain_text.slice(span.start, span.end);
    result.spans.push(span);
  }


NoText
  = SpanOpenCode / SpanCloseCode / '\n+++' / '+++\n' / '+++'

SpanOpenCode = '<' id:NullableId '<' { return id; }
SpanCloseCode = '>' id:NullableId '>' { return id; }

Newlines = [ \t\r\n]+
Spaces = [ \t]+

NullableId 'nullable identifier'
  = $(Id / '') { return text(); }

Id 'identifier'
  = [a-zA-Z0-9][_a-zA-Z0-9]* { return text(); }

Text 'text node'
  = (!NoText .)+ {
    result.plain_text += text();
    plain_text_offset += text().length;
  }

## Data.coffee
window.Data = Backbone.Model.extend
  defaults:
    annotations: []


## Data.js
// Generated by CoffeeScript 1.10.0
(function() {
  window.Data = Backbone.Model.extend({
    defaults: {
      annotations: []
    }
  });

}).call(this);

## Editor.coffee
window.Editor = Backbone.D3View.extend
  namespace: null
  tagName: 'div'

  events:
    input: 'compile'

  initialize: (conf) ->
    @d3el.classed 'editor', true

    @textarea = @d3el.append 'textarea'
    @status_bar = @d3el.append 'div'
      .attr
        class: 'status_bar'

    @parser = PEG.buildParser conf.grammar

    # example code
    @textarea.node().value = '''
      This is <<BreakDown>B>, a language that can be used to select portions of text for <<annotation>A>.

      <<Nested <<spans>1> are allowed>2>, as well as <<newlines
      within spans>N>. Moreover, <<BreakDown>B> <3<supports <4<a syntax>3> for overlapping spans>4>.

      Actual annotations are based on RDF triples, and are included in one or more sections like the following one:
      +++
      A foaf:page https://en.wikipedia.org/wiki/Annotation
      +++
    '''
    @compile()

  compile: () ->
    @status_bar.text 'All ok.'
    @status_bar.classed 'error', false

    try
      data = @parser.parse @textarea.node().value
      @model.set 'annotations', data.spans
    catch e
      @status_bar.text "Line #{e.location.start.line}: #{e.message}"
      @status_bar.classed 'error', true


## Editor.js
// Generated by CoffeeScript 1.10.0
(function() {
  window.Editor = Backbone.D3View.extend({
    namespace: null,
    tagName: 'div',
    events: {
      input: 'compile'
    },
    initialize: function(conf) {
      this.d3el.classed('editor', true);
      this.textarea = this.d3el.append('textarea');
      this.status_bar = this.d3el.append('div').attr({
        "class": 'status_bar'
      });
      this.parser = PEG.buildParser(conf.grammar);
      this.textarea.node().value = 'This is <<BreakDown>B>, a language that can be used to select portions of text for <<annotation>A>.\n\n<<Nested <<spans>1> are allowed>2>, as well as <<newlines\nwithin spans>N>. Moreover, <<BreakDown>B> <3<supports <4<a syntax>3> for overlapping spans>4>.\n\nActual annotations are based on RDF triples, and are included in one or more sections like the following one:\n+++\nA foaf:page https://en.wikipedia.org/wiki/Annotation\n+++';
      return this.compile();
    },
    compile: function() {
      var data, e, error;
      this.status_bar.text('All ok.');
      this.status_bar.classed('error', false);
      try {
        data = this.parser.parse(this.textarea.node().value);
        return this.model.set('annotations', data.spans);
      } catch (error) {
        e = error;
        this.status_bar.text("Line " + e.location.start.line + ": " + e.message);
        return this.status_bar.classed('error', true);
      }
    }
  });

}).call(this);

## index.coffee
app = new AppView
  el: 'body'
  model: new Data

## index.css
html, body {
  margin: 0;
  padding: 0;
  width: 100%;
  height: 100%;
  overflow: hidden;
}

body {
  display: flex;
  flex-direction: row;
}
body > * {
  width: 0;
  flex-grow: 1;
}

.editor {
  display: flex;
  flex-direction: column;
  border-right: 2px solid gray;
}

textarea {
  flex-grow: 1;
  height: 0;
  resize: none;
  border: 0;
  outline: 0;
}

.status_bar {
  height: 22px;
  background: #DDD;
  border-top: 1px solid gray;
  font-family: sans-serif;
  font-size: 12px;
  padding: 4px;
  box-sizing: border-box;
}
.error {
  background: #F77;
}


.annotation {
  font-family: sans-serif;
  font-size: 12px;
  margin: 8px;
  margin-bottom: 12px;
}

.annotation .id {
  color: #555;
}
.annotation .span {
  background: #B9DBF3;
  padding: 4px;
}

## index.html
<!DOCTYPE html>
<html>
  <head>
    <meta charset="utf-8">
    <title>BreakDown language</title>
    <link rel="stylesheet" href="index.css">
    <script src="http://d3js.org/d3.v3.min.js"></script>
    <script src="/webvis/tmp/peg-0.9.0.min.js"></script>
    <script src="http://underscorejs.org/underscore-min.js"></script>
    <script src="http://backbonejs.org/backbone-min.js"></script>
    <script src="backbone.d3view.js"></script>

    <!-- your views go here -->
    <script src="AppView.js"></script>
    <script src="Editor.js"></script>
    <script src="AnnotationView.js"></script>

    <!-- your models go here -->
    <script src="Data.js"></script>
  </head>
  <body>
    <script src="index.js"></script>
  </body>
</html>

## index.js
// Generated by CoffeeScript 1.10.0
(function() {
  var app;

  app = new AppView({
    el: 'body',
    model: new Data
  });

}).call(this);

## Table.js
// Generated by CoffeeScript 1.10.0
(function() {
  window.Table = Backbone.D3View.extend({
    namespace: null,
    tagName: 'table',
    initialize: function() {
      return this.listenTo(this.model, 'change:rows', this.render);
    },
    render: function() {
      var data_cells, header, header_cells, rows, rows_data;
      rows_data = this.model.get('rows');
      header = rows_data.length > 0 ? Object.keys(rows_data[0]) : [];
      this.d3el.selectAll('*').remove();
      header_cells = this.d3el.append('tr').selectAll('th').data(header);
      header_cells.enter().append('th').text(function(d) {
        return d;
      });
      rows = this.d3el.append('tbody').selectAll('tr').data(rows_data);
      rows.enter().append('tr');
      data_cells = rows.selectAll('td').data(function(d) {
        return Object.keys(d).map(function(k) {
          return d[k];
        });
      });
      return data_cells.enter().append('td').text(function(d) {
        return d;
      });
    }
  });

}).call(this);

## thumbnail.png

      
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              thumbnail.png