Éric Renaud-Houde num3ric
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| #include <iostream> | |
| #include <vector> | |
| #include <algorithm> | |
| #include <iterator> | |
| #include <assert.h> | |
| typedef std::chrono::high_resolution_clock Clock; | |
| template<typename T> |
num3ric
/ seqalignment.py
Created
September 16, 2011 18:26
Sequence alignment - Dynamic programming algorithm
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| #!/usr/bin/python -O | |
| import numpy as np | |
| from numpy import array | |
| A, C, G, T = 0, 1, 2, 3 | |
| int_to_char = {0:'A', 1:'C', 2:'G', 3:'T'} | |
| #indel = -1 | |
| #scoring = array([[1,-1,-1,-1], | |
| #[-1,1,-1,-1], |
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| import numpy as np | |
| def GENP(A, b): | |
| ''' | |
| Gaussian elimination with no pivoting. | |
| % input: A is an n x n nonsingular matrix | |
| % b is an n x 1 vector | |
| % output: x is the solution of Ax=b. | |
| % post-condition: A and b have been modified. | |
| ''' |
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| -.../Build/Android/PipelineCaches/... | |
| -.../PS4/... | |
| -.../QNX/... | |
| -.../XB1/... | |
| -.../Platforms/GDK/... | |
| -.../Platforms/PS5/... | |
| -.../Platforms/Sony/... | |
| -.../Platforms/WinGDK/... | |
| -.../Platforms/XSX/... | |
| -.../Platforms/XboxCommon/... |
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