nvictus

# -*- coding: utf-8 -*-
"""
Request snapshots from the UCSC Genome Browser.

"""
from __future__ import division, print_function, unicode_literals
from collections import OrderedDict
import sys
import re

nvictus

nvictus

nvictus

import traceback
import warnings
import sys

def warn_with_traceback(message, category, filename, lineno, file=None, line=None):

    log = file if hasattr(file,'write') else sys.stderr
    traceback.print_stack(file=log)
    log.write(warnings.formatwarning(message, category, filename, lineno, line))

nvictus

nvictus

"\e[A": history-search-backward
"\e[B": history-search-forward
set show-all-if-ambiguous on
set completion-ignore-case on

nvictus

def set_postmortem_hook():
    import sys, traceback, ipdb
    def _excepthook(exc_type, value, tb):
        traceback.print_exception(exc_type, value, tb)
        print()
        ipdb.pm()
    sys.excepthook = _excepthook

nvictus

[
    "#000000",
    "#FFFF00",
    "#1CE6FF",
    "#FF34FF",
    "#FF4A46",
    "#008941",
    "#006FA6",
    "#A30059",
    "#FFDBE5",

nvictus

"""
Forked from: https://gist.github.com/nokados/e8f0a64b55099f2f07a50f2b090c91c7

Changes
* Added slider control to scroll through pages of really large dataframes.
* Reduce flicker by making events trigger widget element updates instead of
  clearing output and re-rendering.
* Add support for dataframe CSS styling.
* Register custom pandas accessor

nvictus

'''
Non-parametric computation of entropy and mutual-information

Adapted by G Varoquaux for code created by R Brette, itself
from several papers (see in the code).

These computations rely on nearest-neighbor statistics
'''
import numpy as np