palexander

jQuery(document).ready(function(){
	var url = "/#TB_inline?height=400&width=600&inlineId=not_browsable_content&modal=true"
        tb_show("", url);
});

palexander

<div id="not_browsable_content" style="display:none;">
	<p>Text for display in modal Thickbox.</p>
</div>

palexander

##
# Get the context for a search term and highlight the term itself
# text: string containing the search term and additional information
# term: string with the term you're looking for
# words: int for how many words to include total
# padding_left: int for characters to the left of the search term
# padding_right: int for characters to the right of the search term
# 
# Only handles the first instance of a given term. Can be modified to take
# character positions denoting the start and stop of term(s).

palexander

# The redirect controller allows for routes-based redirects
# as we move old content to new URL locations.

class RedirectController < ApplicationController
  def index
    if params[:url] # We were provided with a url to redirect to
      params_string = ""
      # Trigger to switch the placeholders
      first_param = true
      # Loop through the given params, ignore ones we know about or are provided by default

palexander

function showResults() {
	// get the position of the input field right now (in case the DOM is shifted)
	var pos = findPos(input);
	// either use the specified width, or autocalculate based on form element
	var iWidth = (options.width > 0) ? options.width : $input.width();
	// add any footer information
	if (options.footer != undefined) $results.append(options.footer);
	// reposition
	$results.css({
		width: parseInt(iWidth) + "px",

palexander

jQuery("#autocomplete").autocomplete(data, {
    onFindValue: jumpToValue,
    onItemSelect: jumpToSelect,
    formatItem: formatItem
    footer: '<div style="color: grey; font-size: 8pt; font-family: Verdana; padding: .8em .5em .3em;">Results provided by <a style="color: grey;" href="http://bioportal.bioontology.org">NCBO BioPortal</a></div>',
});

palexander

Jun 27, 2010 10:15:56 PM org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor processChildren
SEVERE: Exception invoking periodic operation: 
java.lang.OutOfMemoryError: GC overhead limit exceeded
	at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:114)
	at org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1306)
	at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1570)
	at org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1559)
	at java.lang.Thread.run(Thread.java:619)
Jun 27, 2010 10:16:42 PM org.apache.tomcat.util.net.AprEndpoint$Acceptor run
SEVERE: Socket accept failed

palexander

# Organization info
$ORG = "NCBO"
$ORG_URL = "http://www.bioontology.org"

# Site name (required)
$SITE = "BioPortal"

# The URL for the BioPortal Rails UI (this application)
$UI_URL = "http://bioportal.bioontology.org"

palexander

# Organization info
$ORG = "NCBO"
$ORG_URL = "http://www.bioontology.org"

# Site name (required)
$SITE = "BioPortal"

# The URL for the BioPortal Rails UI (this application)
$UI_URL = "http://bioportal.bioontology.org"

palexander

2010-08-11 15:05:08,009 [http-8080-4] ERROR - Could not toggle autocommit
java.sql.SQLException: Connection com.mysql.jdbc.JDBC4Connection@4067f6d is closed.
	at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.checkOpen(DelegatingConnection.java:354)
	at org.apache.tomcat.dbcp.dbcp.DelegatingConnection.setAutoCommit(DelegatingConnection.java:331)
	at org.apache.tomcat.dbcp.dbcp.PoolingDataSource$PoolGuardConnectionWrapper.setAutoCommit(PoolingDataSource.java:317)
	at org.hibernate.transaction.JDBCTransaction.toggleAutoCommit(JDBCTransaction.java:194)
	at org.hibernate.transaction.JDBCTransaction.commitAndResetAutoCommit(JDBCTransaction.java:142)
	at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:115)
	at org.springframework.orm.hibernate3.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:655)
	at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:732)