paulgradie

__author__ = 'Paul G'

from sys import argv
import os
import re
script = argv

print """\nHi USER (lol Tron joke!) This simple script is meant to help you format your reference file.\n
It is really only meant to handle one chromosome file at a time,a future update will allow for entire reference fix.

paulgradie

paulgradie

"""adapted from https://github.com/OlavHN/bnlstm to store separate population statistics per state"""
import tensorflow as tf, numpy as np
RNNCell = tf.nn.rnn_cell.RNNCell

class BNLSTMCell(RNNCell):
    '''Batch normalized LSTM as described in arxiv.org/abs/1603.09025'''
    def __init__(self, num_units, is_training_tensor, max_bn_steps, initial_scale=0.1, activation=tf.tanh, decay=0.95):
        """
        * max bn steps is the maximum number of steps for which to store separate population stats
        """